Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1988 132 1e-25 seq2980 123 6e-23 >seq1988 Length=7662 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || |||||||| ||||| | |||||| || ||||| || ||||| || Sbjct 4846 TCCTTCTGAATGTTGTAGTCAGAGAGAGTACGACCGTCCTCGAGTTGCTTGCCAGCGAAG 4787 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | |||||| || ||||| || || || || ||||||||||| || || || || Sbjct 4786 ATCAGTCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTA 4727 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| || || ||||| || || ||||||||||| || | || || || Sbjct 4726 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTCAACGTCTTGACG 4667 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 4666 AAGATTTGCAT 4656 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| || || || || || | || || || ||||| || || Sbjct 4566 GTAGACTCCTTCTGGATATTGTAATCCGACAGGGTGCGGCCATCCTCAAGTTGCTTACCG 4507 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||| |||||||| || || || || || ||||||||||| || Sbjct 4506 GCAAAGATGAGACGTTGTTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTA 4447 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || ||||| || || || ||||| || || | || Sbjct 4446 ACATTGTCGATGGTATCAGAAGACTCGACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTC 4387 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 4386 TTCACGAAGATCTGCAT 4370 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || |||||||| || || | || || || || || ||||||||||| Sbjct 4050 TCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAG 3991 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | || || |||||||| || || || || ||||| ||||| || || ||||| Sbjct 3990 ATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTG 3931 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || | || || || || || || ||||| || || | || || || Sbjct 3930 TCGATCGTGTCAGAGGACTCGACTTCGAGGGTGATCGTCTTGCCCGTCAACGTCTTGACG 3871 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 3870 AAGATCTGCAT 3860 >seq2980 Length=15283 Score = 123 bits (136), Expect = 6e-23 Identities = 280/415 (67%), Gaps = 7/415 (2%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||| ||||| ||||| || || || || |||| | ||||| ||| ||||| Sbjct 12372 GATGGGATCGTCAACGAGAACCTCGTCGAACGATTCTCGAACGAGGTGCAGGCAGCTGAA 12313 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | || || ||||| ||||| || || || || || |||||||||| |||| Sbjct 12312 GCTCGTTGCTTCTACGGCTTCCAAATCATGATGGAGAACATCCATTCAGAGACGTACTCC 12253 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACT-ATTTTCTTCTAT 269055 || | || ||||| || || | || ||| | | || || ||| ||| |||| Sbjct 12252 CTCCTCATTGATACCTACATCCAAGACGTCAA-GCAGCGAGAATACTTATTCGACGCTAT 12194 Query 269056 -GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATA 269114 |||| |||| |||| | || || | || |||||||| |||||| ||| Sbjct 12193 CGAGA-CTATTCCCTGTATCCAGAAGAAGGCCGAGTGGGCTCTTCGGTGGATATCAGATC 12135 Query 269115 GCGCGCCT---TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTT 269171 | || | || |||| | | || || ||||| || |||||||| |||||||||| Sbjct 12134 AACAGTCTACGTTCGCAGAACGTCTCGTCGCCTTTGCAGCGGTAGAAGGCATATTCTTTT 12075 Query 269172 CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTT 269231 | || | ||| || || || ||||||||||| || || ||||| ||||||||| | || | Sbjct 12074 CTGGCTGTTTCGCGGCGATTTTTTGGTTGAAAAAGAGGGGCCTCATGCCAGGACTGACGT 12015 Query 269232 TCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 ||| || || |||| || || ||||| || || || || || |||||||| Sbjct 12014 ACTCGAATGAGCTGATCAGTAGAGACGAGGGGTTGCATACTGATTTTGCTTGTTT 11960 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || || ||||| || || ||||| ||||| || || ||||| || ||||||||||| Sbjct 14388 GTCGCGTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCTCTTTCGCATCTATCTTTTGG 14447 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| | || | ||||| || || || ||||| || || ||||| ||| | ||| Sbjct 14448 TTGAAGAAGCGTGGTTTGATGCCTGGCTTGACCTTCTCGAATGAGTTGATCAGCCGTGAC 14507 Query 269258 GAAGGTTTACACTGCGACTTCGCTTGTTT 269286 || || | || |||||| ||||| || Sbjct 14508 GAGGGCATGCATACCGACTTTGCTTGCTT 14536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151245728530092