Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3639 109 9e-20 seq496 93.3 7e-15 seq942 89.7 8e-14 seq1980 82.4 1e-11 >seq3639 Length=16033 Score = 109 bits (120), Expect = 9e-20 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| ||||||||||||||||| || |||||||| || |||||| |||| Sbjct 10698 AGGTATCACAAAGCCCGCTATCCGTCGTCTGGCGCGACGTGGTGGTGTGAAGCGTATCTC 10639 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||||||||| | ||| | |||| | ||||||||||| Sbjct 10638 TGGTCTTATCTATGAAGAAACTCGAGGTGTTCTCAAGATCTTCCT 10594 >seq496 Length=15054 Score = 93.3 bits (102), Expect = 7e-15 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 16470 AAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCT 16529 |||| ||||| ||||| ||||| |||||||| || |||||||| || ||||||||| | | Sbjct 7342 AAGGTATCACTAAGCCCGCTATTCGTCGTCTTGCCCGTCGTGGCGGTGTCAAGCGTATTT 7401 Query 16530 CTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 | || | |||| || |||| |||| |||| | ||||||||||| Sbjct 7402 CAGGTCTCATCTACGAGGAGACCCGTGGTGTTCTCAAGATCTTCCT 7447 >seq942 Length=7565 Score = 89.7 bits (98), Expect = 8e-14 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 ||||| |||||||| || ||||||||||| ||||||||| |||| || || | || || Sbjct 7060 GCTATTCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCCGGTCTGATTTACGAG 7001 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| ||| | ||| | || |||||||| ||| ||| || | || || || ||| Sbjct 7000 GAGACTCGCGGTGTCCTCAAAATCTTCCTTGAGAACGTCATTCGCGACTCTGTCACCTAC 6941 Query 16607 ACCGAGCACGCTAA 16620 ||||| ||||| || Sbjct 6940 ACCGAACACGCAAA 6927 >seq1980 Length=13657 Score = 82.4 bits (90), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 ||||| |||||||| ||||||||||| || ||||||||| | || || || |||| || Sbjct 1784 GCTATTCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCCGGCCTGATCTACGAG 1843 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| ||||| ||| | ||||||||| | ||| ||| Sbjct 1844 GAGACTCGTGGTGTCCTCAAGATCTTCTTGGAGAACGT 1881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065737836857