Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2651 145 5e-30 seq167 140 2e-28 seq1988 93.3 3e-14 seq105 82.4 5e-11 >seq2651 Length=12373 Score = 145 bits (160), Expect = 5e-30 Identities = 222/313 (71%), Gaps = 9/313 (3%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||| |||||||||| || |||||||| |||||||||||| ||||||| | || |||| Sbjct 5693 CCAAGATCGAGGGTAAAGGTAACGGTATCAAAACCGTCATTCCCAACATGTCCGACGTCG 5752 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 || || ||| | || ||| ||||||| || || |||| ||||| ||||||||||||| Sbjct 5753 CTCGCGCTCTCAGTCGACCTCCCACCTATCCCACCAAATTCTTCGGATGCGAACTTGGCG 5812 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | |||||| || || | || ||||| || | ||| || ||||| | ||| || || Sbjct 5813 CCCAGACGTCATTCGACGAGAAGAACGACCGGTACATTGTGAACGGTGCCCATGACGCTA 5872 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | ||||| | || | | |||| || || ||| || || || || | ||| Sbjct 5873 CGAAGCTCCGTGAGCTGTTGGACGTTTTCATCGACAAATTCGTCCTTTGCAAGTCTTGCA 5932 Query 6472 ATAACCCGGAGACCGAGCTTATTGTGTCTACCAAG-AGAA--ACACCATCTCTCAGGGCT 6528 | ||||| |||||||| || || | |||||| || | | | |||| | || || Sbjct 5933 AGAACCCCGAGACCGATCTCATCAT---CACCAAGCAGGAGGAGATCATC---CGGGACT 5986 Query 6529 GCAAAGCGTGCGG 6541 |||| |||||||| Sbjct 5987 GCAAGGCGTGCGG 5999 >seq167 Length=9215 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 447 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 388 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 387 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 353 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 7666 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 7607 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 7606 GCCAATATTTAGCTTTA 7590 >seq1988 Length=7662 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || || |||||||| ||||| ||||| ||||| | | ||| |||| || | ||| Sbjct 4858 TGGAGCGTACTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTACGACCGTCCTCGAGTTGC 4799 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || || || ||||| |||| |||| || || |||||| ||| || Sbjct 4798 TTGCCAGCGAAGATCAGTCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTG 4739 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || || | || || || | || || || | || ||||| ||||||||| Sbjct 4738 GCCTTGACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTC 4679 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 || || || ||||| || |||||| Sbjct 4678 AACGTCTTGACGAAGATTTGCATG 4655 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || ||||||||||| |||| || | || || | ||| || |||||||| Sbjct 4561 CTCCTTCTGGATATTGTAATCCGACAGGGTGCGGCCATCCTCAAGTTGCTTACCGGCAAA 4502 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || |||||||| || | || | ||| || ||||| ||| ||| ||| ||||| Sbjct 4501 GATGAGACGTTGTTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTAACATT 4442 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || ||||| | || || || | || || || || || ||||| || ||||| Sbjct 4441 GTCGATGGTATCAGAAGACTCGACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTCAC 4382 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 4381 GAAGATCTGCAT 4370 >seq105 Length=629 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || |||||||||||||| ||||| || || | |||| | || || | ||| Sbjct 582 TGAAGCGTACTCTCCTTTTGAATGTTGTAGTCGGAGAGTGTACGTCCATCTTCGAGTTGC 523 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || || ||||| || |||| |||| ||||| ||||| ||||| Sbjct 522 TTGCCAGCGAAGATCAGACGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGGATTTTC 463 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||| || | | || || | || || || || ||||| ||||| || || Sbjct 462 GCCTTCACGTTGTCAATCGTGTCGGAAGACTCGACCTCCAACGTAATGGTTTTCCCTGTG 403 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || || || || |||||||| Sbjct 402 AGCGTCTTGACAAAGATCTGCAT 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334904953633019