Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2980 145 1e-29 seq176 145 1e-29 >seq2980 Length=15283 Score = 145 bits (160), Expect = 1e-29 Identities = 372/563 (66%), Gaps = 10/563 (2%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 |||||| || ||||| || | |||||||||||||| || | || || || |||| Sbjct 11959 CAAACAAGCAAAATCAGTATGCAACCCCTCGTCTCTACTGATCAGCTCATTCGAGTACGT 12018 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 ||||| ||||| ||||| | |||||| | |||||| || | ||| || | |||||||| Sbjct 12019 CAGTCCTGGCATGAGGCCCCTCTTTTTCAACCAAAAAATCGCCGCGAAACAGCCAGAAAA 12078 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG----T 32832 ||| || |||||||| || |||||||| | || | ||| | ||| ||| | Sbjct 12079 GAATATGCCTTCTACCGCTGCAAAGGCGACGAGACGTTCTGC-GAACGTAGACTGTTGAT 12137 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | ||||||| ||||||| ||||||||||| | | ||| || || ||||| |||| Sbjct 12138 CTGATATCCACCGAAGAGCCCACTCGGCCTTCTTCTGGATACAGGGAATAGTCTCGATAG 12197 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | | || | || | | | || |||| | || |||||||| | || | Sbjct 12198 CGTCGAATAAGTATTCTCGCTGCTTGACGTCTTGGATGTAGGTATCAATGAGGAGGGAGT 12257 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 || | || ||||| ||||| || || ||||| || ||||||||||| | ||| || | Sbjct 12258 ACGTCTCTGAATGGATGTTCTCCATCATGATTTGGAAGCCGTAGAAGCAACGAGCTTCAG 12317 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 ||| || || | | |||||||| | | || || || || || || || | Sbjct 12318 CTGCCTGCACCTCGTTCGAGAATCGTTCGACGAGGTTCTCGTTGACGATCCCATCGGAGC 12377 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTA 33128 | || || || || | ||| || || |||| ||||| | ||| | | Sbjct 12378 CAGCGAAGAAGGCGAGTACGTGCGAGATGAAATGACGTTCGT-TATCGTTCAGACGGGTG 12436 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| || | ||| | || | || | ||||| ||||||| ||||| |||||| Sbjct 12437 TGCCAGTCTACCAGATCGTGCGAGAGGTCGATCTCTTCGGCTGTCCAGAATGAAGCCTCT 12496 Query 33189 GCCTTTTTATACATATTCCAGAT 33211 |||||||||||||| | ||| || Sbjct 12497 GCCTTTTTATACATTTGCCAAAT 12519 >seq176 Length=24199 Score = 145 bits (160), Expect = 1e-29 Identities = 358/539 (66%), Gaps = 12/539 (2%) Strand=Plus/Minus Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741 |||||||| | || || | ||| ||||| ||||| | || ||||| || || | ||| Sbjct 19865 CCCTCGTCGCGGCTGATCAGTTCATTGGAGAACGTCAAGCCAGGCATGAGACCTCTCTTC 19806 Query 32742 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801 || ||||| || ||||||||||| || || || ||||| |||||||| || || |||||| Sbjct 19805 TTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAGATTCCTTCAACCGCAGCAAAG 19746 Query 32802 GCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAAT 32856 |||| |||| || | ||| | || || ||| ||||| | |||||| | Sbjct 19745 GCAACGAGTCGTTCGGC-GAACGCGGACT-TCTTGTCTGAGATCCAGCGTAAAGCCCAGT 19688 Query 32857 CGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCAT 32916 | |||||||| || | ||||| || || || || || | ||||||| | || Sbjct 19687 CAGCCTTCTTCTTGATGCAAGGAATCGTTTCGATGGCGTCGAAGAGATGCTCCCGTTGGG 19628 Query 32917 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 32976 | ||||| | || ||||| || | || |||| | || || |||||||| || | Sbjct 19627 TCTGGTCTTTGATGTACGTATCGATGAGGAGGGAATACGTCTCGGAGTGAATGTTCTCCA 19568 Query 32977 TGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33036 | ||||| || || |||||||| | ||||| | || ||||| | | || | Sbjct 19567 TCATGATTTGGAAGCCATAGAAGCAGCGGGCCTCAGCTGCTTGGACTTCGTTGGAGAACC 19508 Query 33037 GTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 33096 |||| | | ||| || || || || ||||| || || || || || | ||||| Sbjct 19507 GTTCAACGAGATTCTCGTTGACAATACCGTCCGAAGCCGCGAAGAAAGCAAGAACATGAG 19448 Query 33097 TTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCAATCATTGATATCTTTAGAT 33152 || |||| |||| || ||| | | | ||| || | |||||||| || Sbjct 19447 AGATGAAATGGCGCTCGT-TGTCGTTCAACCGGTGTTGCCAGTCGTGCATATCTTTCGAC 19389 Query 33153 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | |||| |||||| ||||||| ||||| || || || || || ||||| | |||||| Sbjct 19388 AGGTCCATCTCTTCCGCTGTCCAGAATGACGCTTCGGCTTTCTTGTACATTTGCCAGAT 19330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633550031780400