Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5862 114 3e-20 seq2980 111 3e-19 seq2317 100 6e-16 seq176 95.1 2e-14 seq5767 93.3 9e-14 seq1347 91.5 3e-13 >seq5862 Length=4026 Score = 114 bits (126), Expect = 3e-20 Identities = 332/506 (66%), Gaps = 24/506 (5%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||| || || || |||| | ||||||||||| || |||| |||||| |||| ||| Sbjct 1903 GGTGAAGACCTTTGCAACTGCCAGTTCTCGCTCGCCTACGGTGCCAAGATTTTGCTCAAC 1844 Query 279405 TC---TACCCGCC-TCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGG 279460 | ||||| || || ||||||||||| |||| || ||||| ||||| || || Sbjct 1843 ACCGCTACCCTCCGTC----TCAAGCGTGGCCACCGTTACGGTCTTTGCGGTCGTAACGG 1788 Query 279461 AGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAA 279520 | || ||| ||| || ||||||||||| | |||||||| | || || || || Sbjct 1787 TACCGGCAAGTCCACGCTCATGCGCGCCATCACCAACGGTCAAGTTGAGGGCTTCCCGTC 1728 Query 279521 CGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAG 279580 | |||||| | || | || || |||||||| |||||| |||| | Sbjct 1727 TCCCGATGAGGTCCGTACCTTCTACGTCGAGCACGATATCGACGGTAGCGAGGCGGACAC 1668 Query 279581 CACTGTGTTCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCC--TGAG 279638 ||| || |||||||| | ||| ||||| | | | ||| ||| ||| Sbjct 1667 CACCGTTCTCGACTTCATCGTGTCCGACAAGC--------GTATCCAGGCGTCCAGGGAG 1616 Query 279639 GAAATCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGT---AATCTGCCA 279695 || ||||| || ||| || | | || | | || |||| || | | | Sbjct 1615 GAGATCATTGAGGCCTTGGCATCC-GTCGGCTTCAGCGACGA--GCGTCAGAAGCAGGCT 1559 Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 | ||| ||| || |||||||||||||||||||| || ||| | || || || || | Sbjct 1558 ATCGGTAGTCTCTCCGGTGGTTGGAAGATGAAGCTCGCACTCGCGCGTGCGATGCTGTTC 1499 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || |||| |||| |||||||| || |||||| ||||| |||||| ||| Sbjct 1498 AAGGCTGACATCCTCTTGCTCGATGAGCCTACTAACCACTTGGACGTTGTCAACGTCGCC 1439 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCT 279841 ||| | | | |||||| |||||||| Sbjct 1438 TGGTTGGAGAACTACCTTACCAGTCT 1413 Score = 104 bits (114), Expect = 5e-17 Identities = 137/188 (73%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| |||| ||||| || | || ||||| ||||| |||| |||| | ||| || | Sbjct 1020 GTCCTTGGTCCCAACGGATCCGGCAAGTCCACCCTCGTCAAGCTCCTCATTGGTGATATG 961 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| | |||| || | | |||||||| |||||| || || | ||||||||| Sbjct 960 GAGCCCAATAAGGGTGGTGAGATCTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCA 901 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 ||||||||||||||||||||||| | || || |||| |||||| | | ||||| | Sbjct 900 CAGCACGCTTTCCACCACATCGATCAGCATCTCGACAAGACTCCCCTCGAGTACATGCTC 841 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 840 TGGCGTTA 833 >seq2980 Length=15283 Score = 111 bits (122), Expect = 3e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 251544 ATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCAT 251603 |||||| || ||||| | || || || || | |||||| | || ||||| | ||||| Sbjct 11608 ATATTCTGAGACACGCCTCTCAAAAAAGTTGGTCTTGCCTTGCAATGAGATCATATCCAT 11667 Query 251604 GAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCG 251663 ||||||||| ||||| | || ||||| | |||||||| || || | |||| || ||| Sbjct 11668 GAAGTCGAATGGGTTCGCGGAGTTGTAGTACTTGGGATTTCCGAGGGAGACGAGGAGGCG 11727 Query 251664 GTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||| || || ||||| | |||||| | ||| ||| | | ||||||||| || Sbjct 11728 GTCGGCAACGAACTCGATATACTGACGCATGAGTGCTGCGTTCATGCCTAT 11778 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || ||||| || |||||||| || | |||||||| || ||||| | |||||| Sbjct 14872 TAATCCGATACTCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATG 14813 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGG 251664 |||||||||||||| || | |||||| |||||| | || | || | || | ||| Sbjct 14812 AAGTCGAAGGGGTTGGTTACGTTGTACACCTTGGGGTTACCCAAAGCAGCCAACAGACGG 14753 Query 251665 TCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || || ||||| | || || | ||| || | |||||||| ||||| Sbjct 14752 TCGGCGACGAACTCAATGTATTGGCACATGAGCTTGGAGTTCATACCAAT 14703 >seq2317 Length=22799 Score = 100 bits (110), Expect = 6e-16 Identities = 238/356 (67%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713 || |||||||||| | |||||| | ||||||| | ||||| ||||| |||| Sbjct 6590 TTTAGGTCGCTCAACTGGTTGGTTACATCTCCGAAAAAGCCCAATACCACCACGGCGAGC 6531 Query 218714 AGAGTCTGCAGGGTGCC-ATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATG 218772 | ||| || | | || | || | | |||| ||||||| || || ||||||||||| Sbjct 6530 AAAGTTTG-ATGATGACGATCATCAACTTGGCCCAGGACTTCGTCGGTAGTAACAACATT 6472 Query 218773 AACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCT 218832 |||||||| || || ||||||||||| ||| | || ||||| ||||| ||| Sbjct 6471 AACTTGCTCCTGCCAAACGGTCAGTTCGGTACCCGCGACCAAGGTGGCAAGGACCATGCC 6412 Query 218833 TCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCC 218892 | |||||||| ||||| || || || ||| || | || | ||||| | | | Sbjct 6411 GCGGCCAGGTACATCTTCACCGAGCCTTCTCCCATGGCTCGTGCGCTGTTCCACCCCTCG 6352 Query 218893 GATG---ATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGG 218949 |||| ||||| || || || | | ||| |||||| | || || || || ||| Sbjct 6351 GATGACCATGTGATC---AACTACCAGGTGGAGGATGGTCACCCCATCGAACCTGAATGG 6295 Query 218950 TATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 || | ||| |||||| || | ||||| || || || | ||||| || || || Sbjct 6294 TACATTCCTATCATTCCGCTTGTCCTCGTGAACGGCGCGGAAGGTATTGGTACTGG 6239 >seq176 Length=24199 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || || ||||| |||||||| || | |||||| | |||||||| | |||||| Sbjct 20226 TAGTCCGAAACACGCTTCTCGAAGAAGTTTGTCTTGCCTTGAAGAGAGATCATGTCCATG 20167 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTT-GGGATGGCCAAGTGCTACGAAGATGCG 251663 |||||||| ||||| || | |||||| ||| ||| || ||||| || |||| || Sbjct 20166 AAGTCGAAAGGGTTCGTCACGTTGTACACCTTAGGGTTGCCCAAGGCACAC-AAGAGACG 20108 Query 251664 GTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||| || || ||||| | || || | ||||| | |||||||||||||| Sbjct 20107 GTCAGCGACGAACTCGATGTATTGACACATCAACTTCGAGTTCATGCCAAT 20057 >seq5767 Length=6734 Score = 93.3 bits (102), Expect = 9e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 270598 AGTTTGCGTGCAGTTGCTTGGTATCCTTGGGGAAACAGTAACCACCATACCCAAAGCTTG 270657 |||| || | || || || |||||||| || || |||||||| ||||| ||||| || | Sbjct 153 AGTTAGCCAGTAGCTGTTTTGTATCCTTTGGCAAGCAGTAACCGCCATAACCAAAACTGG 212 Query 270658 GGTTACAGTACCCGCTGCCAATACGAGGTTCCA-GCATAACCCCCTCCACAATCTTGGAG 270716 |||| ||| | |||| || || || |||| ||| | | || | | |||| | Sbjct 213 GGTTGTTGTAATGGTTGCCTATGCGCGGATCCATGCACA-CGCCTTGGATGATCTGCTTG 271 Query 270717 GCATCAAGGTTGTGTTTGAGAGCAAATGTGTCCAGTTCATTGAAATAACTAACGCGCATT 270776 | ||| || |||| || || | || |||||||| |||||| | || | |||| Sbjct 272 GTATCCAGTCTGTGGATGGCGGCGTAGGTATCCAGTTCGTTGAAAAATGCCACTCTCATT 331 Query 270777 GCCAGGTATGTGTTGGCAAATAGTTTTA 270804 || ||||||||||| ||||||||||||| Sbjct 332 GCGAGGTATGTGTTTGCAAATAGTTTTA 359 >seq1347 Length=113524 Score = 91.5 bits (100), Expect = 3e-13 Identities = 238/358 (66%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 293014 CTGACATAATACACAAGTGTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTC 293073 |||| ||||||| || || | ||||||||||||| ||||||| |||| || Sbjct 33392 CTGAGGTAATACATTCCCGTCTTCAAACCCTTCTTCCATCCGTAGAAGTGCATGCTCGTG 33333 Query 293074 A-TAGACTTCAGTG-TGGGAGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAA 293131 | | ||| | ||| |||||| |||| || ||||| || | ||| | | Sbjct 33332 AGTTGAC--CGGTGGTGGGAGATTGCAGGTGAACGTTCAACGATTGAGATTGACAAATGA 33275 Query 293132 AGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCT 293191 ||||||||||||| ||||||||||||| || ||||| ||||||||||| |||| Sbjct 33274 AGGCACCACGATCCGCAGCGAGGTCAAGAACCTTCTTCTGGGAGATCTCCCAAACAGTCT 33215 Query 293192 TGTACACTGCCTTGA---CATCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGT 293248 |||| | ||||||| | |||||| | | || ||||||||| ||||| || Sbjct 33214 TGTAGATCGCCTTGATGTCGTCAGGAATATTTGGGAT---CTTCTGGATGGACCCGTTGT 33158 Query 293249 TGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGA 293308 ||| || || |||||||||| ||| ||| | || | | ||||| || | Sbjct 33157 CGGCGATGATGCGGTTCTTCATCTCATCGTTCCACAACTTGCGGTCGACAAGCTCACGAA 33098 Query 293309 CAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTT 293366 || | | | |||||| ||||||| ||||| || ||||| |||| ||||| Sbjct 33097 GCAGCCAGGGGCAGACAACCTGGAACTCGCCAGCCAGCACACGACGAGTGTAGATGTT 33040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027700512373509