Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1988 116 4e-21 seq105 86.0 6e-12 >seq1988 Length=7662 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || ||||||||||| | || |||||| | || |||||||||||||| || | Sbjct 4278 TCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 4219 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| ||||||||||| || ||||| || || || || || || ||| ||| || Sbjct 4218 ATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTG 4159 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| | || || || | ||| | |||||| ||||||||||| || ||| Sbjct 4158 TCGATCGTGTCAGACGACTCGACCTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTGACG 4099 Query 64433 AAAATTTGCATT 64444 || || |||||| Sbjct 4098 AAGATCTGCATT 4087 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || || |||||||| | | |||||| | || ||||| ||||| ||| Sbjct 4566 GTAGACTCCTTCTGGATATTGTAATCCGACAGGGTGCGGCCATCCTCAAGTTGCTTACCG 4507 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| || || ||||| |||||||| || || || ||||| || ||| ||| Sbjct 4506 GCAAAGATGAGACGTTGTTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTA 4447 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | |||||| | || || || | || | |||||||||||||||||| Sbjct 4446 ACATTGTCGATGGTATCAGAAGACTCGACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTC 4387 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 4386 TTCACGAAGATCTGCAT 4370 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || || |||||||| | || ||||| | ||||| |||||||||||||| | Sbjct 3765 TCCTTCTGGATATTGTAATCCGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAG 3706 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| |||||||||||||| ||||| || || || ||||| || ||| ||| || Sbjct 3705 ATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTTG 3646 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| || || || || | || | ||||||||| |||| || |||||| Sbjct 3645 TCAATGGTATCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTTACG 3586 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 3585 AAGATCTGCAT 3575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||| || || |||| || || || ||||||||||| || | Sbjct 4086 CCTCCACGCAGACGAAGAACGAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAA 4027 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||| || ||| | || | || |||||||| |||||| Sbjct 4026 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 3967 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| || | || ||| || || ||| Sbjct 3966 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACT 3907 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| ||||| || || ||||| || ||||| Sbjct 3906 TCGAGGGTGATCGTCTTGCCCGTCAACGTCTTGACGAAGATCTGCAT 3860 >seq105 Length=629 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || |||||||||||||| || | || || || | ||||| || |||||||| || | Sbjct 570 TCCTTTTGAATGTTGTAGTCGGAGAGTGTACGTCCATCTTCGAGTTGCTTGCCAGCGAAG 511 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || || || ||||||||||| || |||||||| || ||||| ||||| Sbjct 510 ATCAGACGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGGATTTT 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499580164699560