Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1988 113 4e-20 seq105 104 2e-17 seq176 87.8 2e-12 seq2980 86.0 6e-12 >seq1988 Length=7662 Score = 113 bits (124), Expect = 4e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| | |||||| |||||||||||| || || | | Sbjct 4847 CTCCTTCTGAATGTTGTAGTCAGAGAGAGTACGACCGTCCTCGAGTTGCTTGCCAGCGAA 4788 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATT 138541 ||| || ||||||||||| ||||| ||||| || ||||| ||| | || | || | | Sbjct 4787 GATCAGTCGCTGTTGGTCGGGAGGGATACCCTCCTTGTC-CTGAATCTTGGCCTTGACGT 4729 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | |||||||| ||||||||||||| || | || ||||| |||| || || | Sbjct 4728 TATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTCAACGTCTTGA 4669 Query 138602 CAAAAATCTGCATG 138615 | || || |||||| Sbjct 4668 CGAAGATTTGCATG 4655 >seq105 Length=629 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||||||||||||||||||| | ||||| || |||||||| || || | | Sbjct 571 CTCCTTTTGAATGTTGTAGTCGGAGAGTGTACGTCCATCTTCGAGTTGCTTGCCAGCGAA 512 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| ||||| || ||||| || || || ||||| ||||| |||||| || | | Sbjct 511 GATCAGACGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTCACGTT 452 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||||| ||||| ||||| | ||| | ||||| || || || || || || Sbjct 451 GTCAATCGTGTCGGAAGACTCGACCTCCAACGTAATGGTTTTCCCTGTGAGCGTCTTGAC 392 Query 138603 AAAAATCTGCAT 138614 ||| |||||||| Sbjct 391 AAAGATCTGCAT 380 >seq176 Length=24199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 || || || |||| || | ||||||||| || ||| ||||| | ||||||||||| Sbjct 20039 GCCCTTCCCGTCGCTCTCATTGGCATGAACTCGAAGTTGATGTGTCAATACATCGAGTTC 20098 Query 52710 GTGGCGGATCGTCTGTTG-GTGCAGCTCGGGC-AGCCAAAGTACTTCAACGCTCGCAATC 52767 || || || ||||| ||| |||| || |||| | || ||| | ||||| || | Sbjct 20099 GTCGCTGACCGTCTCTTGTGTGC--CTTGGGCAACCCTAAGGTGTACAACGTGACGAACC 20156 Query 52768 CGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAG 52827 | || || || ||| ||| || || ||| | |||||||| ||||| ||||||||||| | Sbjct 20157 CTTTCGACTTCATGGACATGATCTCTCTTCAAGGCAAGACAAACTTCTTCGAGAAGCGTG 20216 Query 52828 T 52828 | Sbjct 20217 T 20217 >seq2980 Length=15283 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGG-T 52729 || |||||| | || ||||||| | ||||| ||||| || || || |||||||||| | Sbjct 14706 GGTATGAACTCCAAGCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGTCTGTTGGCT 14765 Query 52730 GCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACAT 52789 || | || | || ||| | ||||| ||| || || || || ||| | | || Sbjct 14766 GCTT-TGGGTAACCCCAAGGTGTACAACGTAACCAACCCCTTCGACTTCATGGATATGAT 14824 Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||||| |||||||||||||||| |||||||||||||| Sbjct 14825 CTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGAGT 14863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496198202255280