Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2980 145 9e-30 >seq2980 Length=15283 Score = 145 bits (160), Expect = 9e-30 Identities = 381/577 (66%), Gaps = 7/577 (1%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 ||||| | || | |||||| ||||||||| ||| | |||||||||||||| |||| Sbjct 11945 AGATGATGGAAAAGCAAACAAGCAAAATCAGTATGCAACCCCTCGTCTCTACTGATCAGC 12004 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| || | || | || ||||| || || || ||||| ||||| || || | || Sbjct 12005 TCATTCGAGTACGTCAGTCCTGGCATGAGGCCCCTCTTTTTCAACCAAAAAATCGCCGCG 12064 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || | |||||||||||||| |||||||| |||||||| || || || | |||| | | Sbjct 12065 AAACAGCCAGAAAAGAATATGCCTTCTACCGCTGCAAAGGCGACGAGACGTTCTGCGAAC 12124 Query 19123 CTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 ||| | || | ||| ||||| || ||||| || |||||||| | | ||| || Sbjct 12125 GTAG-ACTGTTGATCTGATATCCACCGAAGAGCCCACTCGGCCTTCTTCTGGATACAGGG 12183 Query 19182 CATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATC 19241 || ||||| |||| | |||| || |||| | |||| | || | ||| Sbjct 12184 AATAGTCTCGATAGCGTCGAATAAGTATTCTCGCTGCTTGACGTCTTGGATGTAGGTATC 12243 Query 19242 TATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAA 19301 || | | |||| | |||||||| || || || || || || || ||||| || Sbjct 12244 AATGAGGAGGGAGTACGTCTCTGAATGGATGTTCTCCATCATGATTTGGAAGCCGTAGAA 12303 Query 19302 ACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAAC 19361 || | ||||| | | ||| || || | | |||| |||||| | || || || || Sbjct 12304 GCAACGAGCTTCAGCTGCCTGCACCTCGTTCGAGAATCGTTCGACGAGGTTCTCGTTGAC 12363 Query 19362 TATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGA 19421 || ||||| | || || || || | ||| || || ||||| ||| | | Sbjct 12364 GATCCCATCGGAGCCAGCGAAGAAGGCGAGTACGTGCGAGATGAAATGACGTTCGT-TAT 12422 Query 19422 GGTTAA----TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCC 19477 ||| | || | ||| || | ||| | || | || | ||||| |||||| Sbjct 12423 CGTTCAGACGGGTGTGCCAGTCTACCAGATCGTGCGAGAGGTCGATCTCTTCGGCTGTCC 12482 Query 19478 AAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 | || ||||||||||| ||||||||||| | ||| || Sbjct 12483 AGAATGAAGCCTCTGCCTTTTTATACATTTGCCAAAT 12519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562036084200360