Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2980 111 2e-19 seq176 86.0 7e-12 seq1170 82.4 9e-11 >seq2980 Length=15283 Score = 111 bits (122), Expect = 2e-19 Identities = 355/541 (66%), Gaps = 15/541 (3%) Strand=Plus/Plus Query 64679 TCTGGGAACTCTATAAAAAGGCTCAAATGAGCAATTGGACTGCGGAAGAAGTTGATTTGT 64738 ||||| || | ||||| |||||| || | | |||||||| || || | ||||||| Sbjct 13978 TCTGGCAAATGTATAAGAAGGCTGAAGCGTCCTTCTGGACTGCTGAGGAGATGGATTTGT 14037 Query 64739 CCAAAGATCTTGACGACTGGAAGACC---CTGAATGAAAATGAAAAGAAATTCATAAAGT 64795 | || || || |||||||| | | | || || || |||||| | ||||| Sbjct 14038 CGAAGGACCTCCACGACTGGGACAACAGACTCAACGACAATGAACGTCACTTCATCTCAC 14097 Query 64796 ACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAATT 64855 || |||| || |||||||||| || ||||| ||||| ||||| || | | Sbjct 14098 ACGTCCTCGCCTTCTTTGCTGCCTCGGATGGTATTGTCAACGAGAACCTCGTCGAGCGGT 14157 Query 64856 TTGCGGATGAAGTGCAGATAAGC-GAAGCGCGCTCATTCTACGCATATCAATGCCATAAT 64914 | | | || || || | ||| ||||| || | ||||||| | ||| | || || Sbjct 14158 TCTCCAACGAGGTTCA-AGCAGCTGAAGCTCGTTGCTTCTACGGCTTCCAAATC-ATGAT 14215 Query 64915 GAA-ATGGTTCATGGCGAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGATC 64973 | | | | ||| || ||||| || | || |||| |||||| ||||| | Sbjct 14216 GGAGAACATCCATTCAGAGACATACTCCCTTCTCATCGACACATACATCAAGGACCC-TA 14274 Query 64974 TGAAAAGA-AGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGA 65032 | || | |||| | || || || ||| | || | || || || |||||||||| Sbjct 14275 AGCAACGCGAGCACCTCTTCGATGCTATCGAGACCATTCCTTGCATCAAGAAGAAGGCTG 14334 Query 65033 AATGGGCAATGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTG 65089 | ||||| || ||| | |||| || ||| | ||| ||||||| ||| | | Sbjct 14335 ACTGGGCCTTGCGCTGGATCTCGGACAAGAACTCTG---CATTCTCCGAGCGTCTTGTCG 14391 Query 65090 CGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGA 65149 |||| || || |||||||||||||||||||| || ||| |||| | |||||||| Sbjct 14392 CGTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCTCTTTCGCATCTATCTTTTGGTTGA 14451 Query 65150 AGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGG 65209 ||||||| ||| | ||||| ||| | |||||| ||||| | || ||| || |||| Sbjct 14452 AGAAGCGTGGTTTGATGCCTGGCTTGACCTTCTCGAATGAGTTGATCAGCCGTGACGAGG 14511 Query 65210 G 65210 | Sbjct 14512 G 14512 >seq176 Length=24199 Score = 86.0 bits (94), Expect = 7e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 64982 AGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAA 65041 |||| | || || |||||| |||| | || || || |||||||||| | ||||| Sbjct 19637 AGCATCTCTTCGACGCCATCGAAACGATTCCTTGCATCAAGAAGAAGGCTGACTGGGCTT 19696 Query 65042 TGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGT 65098 | ||| | |||| ||||| | | |||||||| || || |||| ||||| Sbjct 19697 TACGCTGGATCTCAGACAAGAAGTC---CGCGTTCGCCGAACGACTCGTTGCCTTTGCTG 19753 Query 65099 GTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGG 65157 || || || ||||||||||| || || || |||| | || | ||| | |||||| | Sbjct 19754 CGGTTGAAGGAATCTTCTTCTCGGGCTCGTT-TGCGTCCATCTTCTGGCTCAAGAAGAGA 19812 Query 65158 GGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 ||||||||||| ||| | ||||| |||||||| || ||| || ||||| Sbjct 19813 GGTCTCATGCCTGGCTTGACGTTCTCCAATGAACTGATCAGCCGCGACGAGGG 19865 >seq1170 Length=3698 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 177772 CCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGAT 177831 ||||||||||| || || ||||| | ||| || ||| |||||||| ||||| ||| Sbjct 2145 CCTCGTCTCGGACTCTCATGATTGAACAAGATACCATTGCACGCATACATGCCATACGAT 2086 Query 177832 TCTCGGTAATTTTTGAC---GAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGAT 177888 || | ||||| ||| || ||||| ||| | |||| ||| ||||| || Sbjct 2085 TCCCTATAATT---GACCGTGATCCAGTACGCGTAGAGCTTGGCGACACCATACGGCGAA 2029 Query 177889 CGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCC 177948 || ||||||||||| ||| || | || ||||| || |||||| || | | ||| Sbjct 2028 CGAGGGTAGAAGGGGGTCGTTTCGCTCTGGGGAGTCTCAACGACTTTTCCGTAGAGCTCA 1969 Query 177949 GAAGTTGAGGCTTGGTA 177965 || || ||||||||||| Sbjct 1968 GATGTGGAGGCTTGGTA 1952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596492426265120