Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2980 104 3e-17 seq1547 82.4 1e-10 >seq2980 Length=15283 Score = 104 bits (114), Expect = 3e-17 Identities = 353/539 (65%), Gaps = 11/539 (2%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| || ||| || | ||||| |||||| | || ||||| | ||| |||||| Sbjct 14512 CCCTCGTCACGGCTGATCAACTCATTCGAGAAGGTCAAGCCAGGCATCAAACCACGCTTC 14453 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||||||||| | |||| ||| || |||||||||||||||||||| || || ||| Sbjct 14452 TTCAACCAAAAGATAGATGCGAAAGAGCCGGAGAAGAAGATACCCTCGACGGCGGCGAAC 14393 Query 122797 GCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTT 122855 || | ||| || |||| ||| | || | ||| | | ||| || ||||| | Sbjct 14392 GCGACAAGACGCTCGGAGAATGCAGAG-TTCTTGTCCGAGATCCAGCGCAAGGCCCAGTC 14334 Query 122856 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT-TCTTTTCAG 122914 |||||||||| || || || | || | ||| || || || | |||| | || | Sbjct 14333 AGCCTTCTTCTTGATGCAAGGAATGGTCTCGATAGCATCGAAGAGGTGCTCGCGTTGCTT 14274 Query 122915 ATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCAT-TTCA 122973 | ||||| |||||| |||| || | || ||||| || ||| | | | || Sbjct 14273 A-GGGTCCTTGATGTATGTGTCGATGAGAAGGGAGTATGTCTCTGAATGGATGTTCTCCA 14215 Query 122974 TTATGGCATTGATATGCGTAGAATGAGCGCGCTTC-GCTTATCTGAACCTCATCCGCAAA 123032 | || | ||| | ||||||| | || ||||| ||| | |||||||| | | || Sbjct 14214 TCAT-GATTTGGAAGCCGTAGAAGCAACGAGCTTCAGCTGCT-TGAACCTCGTTGGAGAA 14157 Query 123033 ATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTA 123092 | || ||||| ||||| ||||| || |||||||||| || |||| || Sbjct 14156 CCGCTCGACGAGGTTCTCGTTGACAATACCATCCGAGGCAGCAAAGAAGGCGAGGACGTG 14097 Query 123093 CTTTATGAATTTCTTTTCATTTTCATTCAG---GGTCTTCCAGTCGTCAAGATCTTTGGA 123149 ||||| | |||||| || || || | | | |||||||| || || || || Sbjct 14096 TGAGATGAAGTGACGTTCATTGTCGTTGAGTCTGTTGTCCCAGTCGTGGAGGTCCTTCGA 14037 Query 123150 CAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTTTTATAGAGTTCCCAGA 123208 |||||| | || || |||||||| | | || |||||| ||||| | || ||||| Sbjct 14036 CAAATCCATCTCCTCAGCAGTCCAGAAGGACGCTTCAGCCTTCTTATACATTTGCCAGA 13978 >seq1547 Length=32498 Score = 82.4 bits (90), Expect = 1e-10 Identities = 170/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 11609 GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATT- 11667 ||||| || | ||| || | ||||| || || || ||||||| || || || || Sbjct 26020 GCACTACGCTTCTTCCCGATGGCATCGATTTCGTCGATGAAGATGATGCACGGCGCGTTC 26079 Query 11668 TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTC 11727 ||| || ||| | || ||||| || || | || ||| ||||||||||||||||| Sbjct 26080 TTCTTGGCCGAAG-CGAACAGATCCCGCACTCGCGAGGAACCGACACCAACAAACATCTC 26138 Query 11728 CACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTC 11786 || || | || ||||| || | | ||| || || || | |||||| || | ||| Sbjct 26139 GACGAATTCTGAACCAGAG-ACGGAAAGGAAAGGTACGTTGGCTTCACCTGCTGTCGCTT 26197 Query 11787 GGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCT 11846 || || | ||| || || ||||| || ||| | ||||| || ||||| || |||| Sbjct 26198 TCGCCAGCAAGGTTTTACCGGTACCGGGAGGACCAGAGAGAATAGCACCTCGTGGAATCT 26257 Query 11847 TGGCACCA 11854 |||||||| Sbjct 26258 TGGCACCA 26265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627950756210400