Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq176 136 4e-27 seq1347 118 1e-21 seq2980 91.5 2e-13 >seq176 Length=24199 Score = 136 bits (150), Expect = 4e-27 Identities = 363/539 (67%), Gaps = 18/539 (3%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | ||||||||| | | || ||||| ||||| | ||| Sbjct 19340 TGTACAAGAAAGCCGAAGCGTCATTCTGGACAGCGGAAGAGATGGACCTGTCGAAAGATA 19399 Query 59653 TGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 || | || ||| | | | | || || |||||| ||||||||| || || | Sbjct 19400 TGCACGACTGGCAACACCGGTTGAACGACAACGAGCGCCATTTCATCTCTCATGTTCTTG 19459 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAAC--TTTTCCAA 59767 | ||||||||||| || || ||||| | || ||| | | ||||| || ||||| Sbjct 19460 CTTTCTTCGCGGCTTCGGACGGTATTGTCAACGAGAATCTCGT--TGAACGGTTCTCCAA 19517 Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTAT 59827 || ||||| || |||||||| | ||||| | | || | | ||| || Sbjct 19518 CGAAGTCCAAGCAGCTGAGGCCCGCTGCTTCTATGGCTTCCAAATCATGATGGAGAACAT 19577 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||||||||||| || ||| | ||||||| || |||| || || || | || Sbjct 19578 TCACTCCGAGACGTATTCCCTCCTCATCGATACGTACATCAAAGA-CCAGACCCAACGGG 19636 Query 59888 TGG-TCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 | ||| ||| ||||| || ||| | || ||| | || | || || || ||||| Sbjct 19637 AGCATCTCTTCGACGCCATCGAAACGATTCCTTGCA-TCAAGAAGAAGGCTGACTGGGCT 19695 Query 59946 ATGCAGTGGATG--AGTCCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 | | ||||| || | | || | | || || |||| ||| | || ||||| ||| Sbjct 19696 TTACGCTGGATCTCAGACAAGAAGTCCGCGTTCGCCGAACGACTCGTTGCCTTTGC-TGC 19754 Query 60003 G-TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTG 60060 | | ||||||||||||||||| |||||||| || | | || ||||||||||| ||| | | Sbjct 19755 GGTTGAAGGAATCTTCTTCTCGGGCTCGTT-TGCGTCCATCTTCTGGCTCAAGAAGAGAG 19813 Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 | |||||||| ||| ||| |||||||| || ||||| ||| ||||||||| | ||| Sbjct 19814 GTCTCATGCCTGGCTTGACGTTCTCCAATGAACTGATCAGCCGCGACGAGGGCATGCAT 19872 >seq1347 Length=113524 Score = 118 bits (130), Expect = 1e-21 Identities = 166/230 (72%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 |||||| | ||| || || |||||||| ||||| || ||||| |||||||| |||||| Sbjct 31656 CGCGCAGTTCTTCAGGGTATCGTAGATACCCTCAATTGAGTCATCCTTCATGCAGACCAG 31597 Query 79743 GAAGC---AGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGC 79799 ||||| |||| || ||| |||||| || ||||| ||||| | |||||| | || Sbjct 31596 GAAGCATGAGCT---CAACTGAGGGTTGGGTGTGCCGGCATTGAACAAGGTCGGAGATGC 31540 Query 79800 GTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGG--GAGGTCG 79857 ||| ||||| || | ||||| || ||| ||||| | ||||||| | ||| Sbjct 31539 GTGAGTGAAATACCGCTCAGACATCAAATTGTATGTCTCAAT--CGCGCGGTCAATGTCA 31482 Query 79858 TCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTC 79907 | || ||||| ||||| || || ||||| | |||| ||||||| |||| Sbjct 31481 GCACCATGGATTCCGACAGCTACTCGCATCAGCAGGTGCTGGGGCCTCTC 31432 Score = 109 bits (120), Expect = 6e-19 Identities = 165/233 (71%), Gaps = 14/233 (6%) Strand=Plus/Plus Query 19096 TGAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCT--- 19152 ||||| ||| ||| |||| | |||||||| || ||||| |||||||| | ||| | Sbjct 31431 TGAGAGGCCCCAGCACCTGCTGATGCGAGTAGCTGTCGGAATCCATGGTGCTGACATTGA 31490 Query 19153 -CCCGCGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGC 19211 | ||||| | ||||||||| | ||||| || || ||||| ||||| | | Sbjct 31491 CCGCGCGATT----GAGACATACAATTTGATGTCTGAGCGGTATTTCACTCACGCATCTC 31546 Query 19212 CGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCT---GTTTCCTAGTGG 19268 ||||| | ||||| ||||| || |||||| ||| || |||| | ||||| || Sbjct 31547 CGACCTTGTTCAATGCCGGCACACCCAACCCTCAGTTG---AGCTCATGCTTCCTGGTCT 31603 Query 19269 CTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCG 19321 |||||||||||| |||||||| |||||||| || || ||| | |||||| Sbjct 31604 GCATGAAGGATGACTCAATTGAGGGTATCTACGATACCCTGAAGAACTGCGCG 31656 Score = 93.3 bits (102), Expect = 5e-14 Identities = 261/387 (67%), Gaps = 18/387 (5%) Strand=Plus/Minus Query 78547 GTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCAT 78605 ||||| || || ||||| ||||||| |||| |||||| ||| || ||||| ||||| Sbjct 32984 GTGTAGGGTTC-AAAGCACTCGTTGAAGCCCAAGATCTGACTGGTAGAAGCGGTAGGCAT 32926 Query 78606 GGGTGCGACCAGTAGAGAATTCCGAA-----GACCATGCGTCTTGATC--TCGACCTTTA 78658 |||||| | || || || |||| | | || |||| | | || || | || | Sbjct 32925 GGGTGCAAGCAACAGGGAGTTCCTGATGCCGGTCCTTGCGACCTTCTCCTTCAAGCTATC 32866 Query 78659 GGCCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGG 78718 | |||||| | || | | | | ||||||||||| || | ||| ||| | | Sbjct 32865 C-CAGTCCCAGAGATCCGTAGGAGTAACACCCCACATGTCGTACTGGAAGATGCCC-CTG 32808 Query 78719 ACGCCGGCGACC-CCTT-GAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGA 78776 | | | ||| |||| | |||||||||||| || ||| || ||| || || | || Sbjct 32807 CTGACAG-GACTGCCTTCGTACGTCTCGTAAGGACCATCCCTCTCGGCAAGATCAC-TG- 32751 Query 78777 CTCGAGC--AGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCC 78834 || | | || || ||||| || | || ||||||||| ||||||||| | |||||| Sbjct 32750 CTGGCGTCGAGAGCAGCGTGATAGATAGTCTCGAAGATCTGCTTGTTGAGGTGACGCGCC 32691 Query 78835 TTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCG 78894 | || |||||||| || | || |||||||| | || || || || | || ||| Sbjct 32690 TCGGGAGAGTCGAACGGCAGCCGAAGGATCATGAACGCGTCAGCGAGACCGTTCACACCG 32631 Query 78895 ATAGCGATCGGTCGGTGGCGCATGTTG 78921 || | || || ||||||||||||||| Sbjct 32630 ATGCCAATGGGACGGTGGCGCATGTTG 32604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 19413 ACGGTATCGTCCCAATGCTCCG--CGTCTTCAACAACACGGCCAGGTACGTCAACCAGGG 19470 ||||||| || || ||||| || ||| | |||| || |||| ||| |||| || Sbjct 31804 ACGGTATTGTGCCTATGCTTCGTGCGTATGATGCAACC--GCTCGGTATGTCGACCAAGG 31861 Query 19471 GGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCAT 19530 ||| ||| || || | || ||||||||||| ||||| |||||||| || || | Sbjct 31862 TGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCACGCTGATATCTT 31921 Query 19531 GGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTT 19590 || ||||| || || || |||||| ||| | |||||| | || ||||||||| || Sbjct 31922 CGAGTTCCTTGACCTTCGTAAGAACCACGGTAAAGAGGAGGTTCGTGCTCGCGACCTGTT 31981 Query 19591 CACGGCCTTGTGGATTCCGGACCTATT 19617 | || || ||| || | ||||| || Sbjct 31982 CTACGCATTATGGGTTTCCGACCTTTT 32008 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/246 (68%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 20081 TCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATG 20140 || || ||||||||||| || || | ||||| || | || || || |||| |||||| Sbjct 32602 TCCAACATGCGCCACCGTCCCATTGGCATCGGTGTGAACGGTCTCGCTGACGCGTTCATG 32661 Query 20141 ATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAG 20200 || || | || | |||||| |||| ||||||| | ||||||||| ||||||||| Sbjct 32662 ATCCTTCGGCTGCCGTTCGACTCTCCCGAGGCGCGTCACCTCAACAAGCAGATCTTCGAG 32721 Query 20201 GCCGTGTACCACGCGGCCCTCCTGGAATCGTGC---GAACTCGCCAAAGAGGACGGCCCG 20257 | | || ||||| || ||| || | || || || ||| | ||| || || Sbjct 32722 ACTATCTATCACGCTGCTCTC---GACGCCAGCAGTGATCTTGCCGAGAGGGATGGTCCT 32778 Query 20258 TACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGC 20317 |||||||||| | | || || | | ||| ||| ||||| ||||||||||| Sbjct 32779 TACGAGACGTACGAAGGCAGTCCTGTCAGCAGGGGCATCTTCCAGTACGACATGTGGGGT 32838 Query 20318 GTCACT 20323 || ||| Sbjct 32839 GTTACT 32844 >seq2980 Length=15283 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || ||| |||||||| | || |||||| || ||||| || ||||| ||||||| ||| Sbjct 12123 TTCGCAGAACGTCTCGTCGCCTTTGCAGCGGTAGAAGGCATATTCTTTTCTGGCTGTTTC 12064 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || ||||| ||| | |||||| | ||||||||||| || |||| | ||| || ||| Sbjct 12063 GCGGCGATTTTTTGGTTGAAAAAGAGGGGCCTCATGCCAGGACTGACGTACTCGAATGAG 12004 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||||| | |||||||| | ||| || ||||| Sbjct 12003 CTGATCAGTAGAGACGAGGGGTTGCATACTGATTTTGC 11966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548453841460560