Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1988 100 2e-16 >seq1988 Length=7662 Score = 100 bits (110), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 39076 ACCAA-ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || |||||||| || || ||||| ||||| | || || || | || || Sbjct 3784 ACCAAGATGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGAGTGCGGCCATCTTC 3725 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||||| || | | ||| ||||| Sbjct 3724 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTTG 3665 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | |||||| ||||| || || | |||||| | | Sbjct 3664 GATCTTTGCCTTGA-CGTTGTCAATGGTATCGGAGGACTCGACCTCGAGCGTGATGGTCT 3606 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || ||||| ||||| Sbjct 3605 TGCCAGTCAGGGTCTTTACGAAGATCTGCAT 3575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 ||||| || ||||| || || || || ||||||| || || || | || |||||||| Sbjct 4290 TGTAGGGTACTCTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATCCTCAAGCTGC 4231 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||| | || | | ||| |||||| ||| || Sbjct 4230 TTGCCAGCGAAGATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTT 4171 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| || |||||| || || | ||||| | ||||| || Sbjct 4170 GCCTTGA-CGTTGTCGATCGTGTCAGACGACTCGACCTCAAGAGTGATGGTCTTTCCGGT 4112 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 4111 CAAAGTCTTGACGAAGATCTGCAT 4088 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||||| || || || || || || | || || || |||| || || || Sbjct 4858 TGGAGCGTACTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTACGACCGTCCTCGAGTTGC 4799 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||| ||||||| || | | ||| |||||| || || Sbjct 4798 TTGCCAGCGAAGATCAGTCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTG 4739 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || ||| |||||||| || | |||||| | || |||||| Sbjct 4738 GCCTTGACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTC 4679 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 | ||| || || ||||||||||| Sbjct 4678 AACGTCTTGACGAAGATTTGCAT 4656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429491422084637