Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2980 161 1e-34 seq176 125 1e-23 >seq2980 Length=15283 Score = 161 bits (178), Expect = 1e-34 Identities = 377/563 (67%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| ||||||||| ||| | || || |||||||| || | || || || | || Sbjct 11960 AAACAAGCAAAATCAGTATGCAACCCCTCGTCTCTACTGATCAGCTCATTCGAGTACGTC 12019 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||| || || | ||||| | |||||| || ||||||||| | ||||||||| Sbjct 12020 AGTCCTGGCATGAGGCCCCTCTTTTTCAACCAAAAAATCGCCGCGAAACAGCCAGAAAAG 12079 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT-GGCT-TCGTTGT 48315 |||||||||||||| || ||||| ||| || | ||| || | | | || | | | | Sbjct 12080 AATATGCCTTCTACCGCTGCAAAGGCGACGAGACGTTCTGCGAACGTAGACTGTTGATCT 12139 Query 48316 G-TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | ||||||||| | ||||| || |||||||||| | ||| || || || || ||||| Sbjct 12140 GATATCCACCGAAGAGCCCACTCGGCCTTCTTCTGGATACAGGGAATAGTCTCGATAGCG 12199 Query 48375 TTAAAGAGAAAGtttttt---tCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 | || |||| || | | ||| |||| | ||| ||||| || | || Sbjct 12200 T---CGAATAAGTATTCTCGCTGCTTGACGTCTTGGATGTAGGTATCAATGAGGAGGGAG 12256 Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||| | || || || || || || || || || || ||||| || || | ||||| Sbjct 12257 TACGTCTCTGAATGGATGTTCTCCATCATGATTTGGAAGCCGTAGAAGCAACGAGCTTCA 12316 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 | ||| ||||| | | |||||||| | | ||||| || || || ||||| Sbjct 12317 GCTGCCTGCACCTCGTTCGAGAATCGTTCGACGAGGTTCTCGTTGACGATCCCATCGGAG 12376 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTA 48608 |||| || || || | ||| || || |||| |||||| ||| | | Sbjct 12377 CCAGCGAAGAAGGCGAGTACGTGCGAGATGAAATGACGTTCGTTATCGTTCAGACGGGTG 12436 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 | |||||| | ||| | || | || | ||||| |||||||| ||||| |||||| Sbjct 12437 TGCCAGTCTACCAGATCGTGCGAGAGGTCGATCTCTTCGGCTGTCCAGAATGAAGCCTCT 12496 Query 48669 GCTTTTTTATACATATTCCATAT 48691 || ||||||||||| | ||| || Sbjct 12497 GCCTTTTTATACATTTGCCAAAT 12519 >seq176 Length=24199 Score = 125 bits (138), Expect = 1e-23 Identities = 371/563 (66%), Gaps = 18/563 (3%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || ||| ||| | || || || | || || | ||| || || || || | Sbjct 19886 CACGCGAAGTCAGTATGCATGCCCTCGTCGCGGCTGATCAGTTCATTGGAGAACGTCAAG 19827 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || || | || |||||||| || || | ||| || || || || ||||| Sbjct 19826 CCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAG 19767 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG-CTTCGTTGTGT-- 48317 || ||||| || || ||||| || |||| || || | || |||| |||| | Sbjct 19766 ATTCCTTCAACCGCAGCAAAGGCAACGAGTCGTTCGGCGAACGCGGACTTC-TTGTCTGA 19708 Query 48318 -ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| ||| ||||| |||||||||||||| | ||||| || ||||| || || | Sbjct 19707 GATCCAGCGTAAAGCCCAGTCAGCCTTCTTCTTGATGCAAGGAATCGTTTCGATGGCGTC 19648 Query 48377 AAAGAGAAAGtttttttCATTG---CT-ATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 |||||| | | | ||| || ||||| | ||| ||||| || | || || Sbjct 19647 GAAGAGA----TGCTCCCGTTGGGTCTGGTCTTTGATGTACGTATCGATGAGGAGGGAAT 19592 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 || | ||||||||||| || || || || || || || || || || | || || | Sbjct 19591 ACGTCTCGGAGTGAATGTTCTCCATCATGATTTGGAAGCCATAGAAGCAGCGGGCCTCAG 19532 Query 48493 -TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 || | || || || | | || |||||| | | |||||| || || || || || | Sbjct 19531 CTGCT-TGGACTTCGTTGGAGAACCGTTCAACGAGATTCTCGTTGACAATACCGTCCGAA 19473 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTA 48608 || || || || || | ||||| || |||| |||||| ||| | | Sbjct 19472 GCCGCGAAGAAAGCAAGAACATGAGAGATGAAATGGCGCTCGTTGTCGTTCAACCGGTGT 19413 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 | |||||| | |||||||| || | || | ||||| |||||||| ||||| || || Sbjct 19412 TGCCAGTCGTGCATATCTTTCGACAGGTCCATCTCTTCCGCTGTCCAGAATGACGCTTCG 19353 Query 48669 GCTTTTTTATACATATTCCATAT 48691 ||||| || ||||| | ||| || Sbjct 19352 GCTTTCTTGTACATTTGCCAGAT 19330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694578935907360