Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1988 138 3e-27 seq105 123 6e-23 >seq1988 Length=7662 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || ||||||||||||||||| || ||| Sbjct 4659 CAAATCTTCGTCAAGACGTTGACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 4718 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || |||||||| ||||| || Sbjct 4719 ACCATCGATAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAACAG 4778 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || || || ||||| || || | ||||| | || || ||| | Sbjct 4779 CGACTGATCTTCGCTGGCAAGCAACTCGAGGACGGTCGTACTCTCTCTGACTACAACATT 4838 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| Sbjct 4839 CAGAAGGAGAGTACGCTCCACCTTGT 4864 Score = 136 bits (150), Expect = 1e-26 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| |||||||| || ||| || Sbjct 3578 CAGATCTTCGTAAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGAT 3637 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||| || ||||| || || || || || |||||||| Sbjct 3638 ACCATTGACAACGTCAAGGCAAAGATCCAAGACAAGGAGGGTATTCCACCCGACCAGCAG 3697 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||||||||| | ||||| | ||||| || || Sbjct 3698 CGTCTCATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCGGATTACAATATC 3757 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||||| Sbjct 3758 CAGAAGGAGAGCACCCTCCATCTTG 3782 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || |||||||||||||| || || ||| ||| Sbjct 3863 CAGATCTTCGTCAAGACGTTGACGGGCAAGACGATCACCCTCGAAGTCGAGTCCTCTGAC 3922 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||| || || || ||||| ||||||||| Sbjct 3923 ACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAA 3982 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| |||||||| ||||| | || ||| | || || ||| | Sbjct 3983 CGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTTTCTGACTACAACATT 4042 Query 178104 CAAAAAGA 178111 || || || Sbjct 4043 CAGAAGGA 4050 >seq105 Length=629 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || |||||||| ||||| || || | ||||| || || ||| Sbjct 383 CAGATCTTTGTCAAGACGCTCACAGGGAAAACCATTACGTTGGAGGTCGAGTCTTCCGAC 442 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || || || ||||| ||||||||||| || ||||||||| Sbjct 443 ACGATTGACAACGTGAAGGCGAAAATCCAAGACAAGGAAGGAATCCCACCCGACCAGCAA 502 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || || |||||||||||| | || || |||| || ||| | Sbjct 503 CGTCTGATCTTCGCTGGCAAGCAACTCGAAGATGGACGTACACTCTCCGACTACAACATT 562 Query 178104 CAAAAAGA 178111 ||||| || Sbjct 563 CAAAAGGA 570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203571589380706