Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq168 122 9e-23 seq332 91.5 2e-13 seq331 87.8 2e-12 >seq168 Length=158170 Score = 122 bits (134), Expect = 9e-23 Identities = 379/583 (65%), Gaps = 13/583 (2%) Strand=Plus/Plus Query 16181 TTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA 16240 || ||||| | || | || ||||| || ||| || | ||||| || | |||||| Sbjct 52969 TTGAGGTGGCTGAAGAGTAAGCACGCAAAATCGGTGTGCATGCCTTCATCACGACTGATA 53028 Query 16241 AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA 16300 ||||||||||||||||| | || ||||| || || ||||| | |||||| || | Sbjct 53029 AGTTCGTTGGAAAAAGTAAGTCCAGGCATCAAGCCACGCTTCTTCATCCAGAAGATTGAC 53088 Query 16301 GCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 ||||| || || || ||||| |||||||| |||| || || || | | ||||| | Sbjct 53089 GCAAACGATCCAGAGAAGAAAATACCCTCTACAGCAGCGAACGCAACGAGGCGTTCGCCA 53148 Query 16361 TACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420 | || | | |||| |||||| | | ||||||| || || | || || ||| Sbjct 53149 AATGTTGATTTCTTATCTGAAATCCACTCAAGGGCCCATTCTGCCTTGCGCTTGATGCAA 53208 Query 16421 TCCATCGTTTCTATGGCCTTAAACA-AT-TTCTCTTTTTCCTGAAT---ATCGATTATAT 16475 ||||| || ||||| | ||| | || ||| | |||| | ||| | |||| Sbjct 53209 GGAATCGTCTCGATGGCATCAAAGAGATATTCAC-----GCTGAGTAGCATCCTTGATAT 53263 Query 16476 ACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATC 16535 | || || || || | || ||| || || |||||||| || || || || | Sbjct 53264 AAGTGTCGATGAGAAGCGAATAGGCTTCGGAATGGATGTTCTCCATCATGATTTGGAAGC 53323 Query 16536 CATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT 16595 ||||||| || || ||||| || | ||| ||||| |||| | ||| ||||||| Sbjct 53324 CATAGAAACAGCGCGCCTCGGCAACTTGGACTTCATTTGAAAACCTCTCCAGAAGGTTCT 53383 Query 16596 CATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAAT---ATT 16652 | || || ||||| ||| ||||| || || || | | |||| ||||||| | Sbjct 53384 CGTTGACAATACCATCAGAGGCAGCGAAGAAAGCAAGAACGTGCGAGATGAAATGACGCT 53443 Query 16653 TTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTG 16712 | |||| | | | | ||| || | | ||||||||| | |||| || || | Sbjct 53444 CGTTGTCATTTAGACGGTTGGTCCAGTCGTGGATATCTTTGGAGAGGTCCATCTCCTCCG 53503 Query 16713 GCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 ||||| || ||| | ||||| || ||||||| ||| || Sbjct 53504 CAGTCCAGAAAGACGCCTCAGCCTTCTTGTACATTTGCCAGAT 53546 >seq332 Length=22363 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263 ||| || ||| || ||||||||||| | |||||| ||||| |||||| ||| || Sbjct 1930 CGCAAATTCGGTGTGAAGTCCTTCGTCCCGAGAGATAAGCTCGTTCGAAAAACATAATCC 1989 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323 |||||| |||||||||||| ||||| || || | ||||| ||| ||||| || || Sbjct 1990 TGGCATCAGTCCTCGTTTCTTCAACCAAAAAATTGATGCAAAGGACGATGAAAAAAAAAT 2049 Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCG 16353 ||||| || | ||| || || | ||| || Sbjct 2050 TCCCTCGACTGCTGCGAATGCTAGTAAGCG 2079 >seq331 Length=21972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 16217 TGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCT 16276 || || |||||||| | | |||||||||||| ||||| ||| |||||||| |||| Sbjct 15746 TGAAGCCCTTCGTCCCGGGAGATAAGTTCGTTCGAAAAGCATAATCCTGGCATCAATCCT 15687 Query 16277 CGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGAT 16336 ||||| || ||||| ||||| | || || || ||||| || || |||||||| | | Sbjct 15686 CGTTTTTTCAACCAAAATATAGATGCGAAGGATGATGAAAAAAAAATCCCCTCAACCGCT 15627 Query 16337 GCAAAAGCGATTAATCGT 16354 || || || | ||| ||| Sbjct 15626 GCGAATGCTAGTAAGCGT 15609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511339957241400