Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq168 179 4e-40 seq5512 82.4 9e-11 >seq168 Length=158170 Score = 179 bits (198), Expect = 4e-40 Identities = 379/562 (67%), Gaps = 10/562 (2%) Strand=Plus/Plus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 || || || |||||| ||| | || || || | ||| || | |||||||||||| || Sbjct 52987 AAGCACGCAAAATCGGTGTGCATGCCTTCATCACGACTGATAAGTTCGTTGGAAAAAGTA 53046 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 ||||| ||||| | ||||||||| || | ||| || || |||||||| |||||||| ||| Sbjct 53047 AGTCCAGGCATCAAGCCACGCTTCTTCATCCAGAAGATTGACGCAAACGATCCAGAGAAG 53106 Query 24252 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT 24311 ||||| || ||||| || || || |||| || | ||| ||| | | | | || | Sbjct 53107 AAAATACCCTCTACAGCAGCGAACGCAACGAGGCGTTCGCCAAATGTTGATTTCTTATCT 53166 Query 24312 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 24368 ||||||| | ||||| || ||||| || | ||||| || ||||| || ||| Sbjct 53167 GAAATCCACTCAAGGGCCCATTCTGCCTTGCGCTTGATGCAAGGAATCGTCTCGATGGCA 53226 Query 24369 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATAC 24428 | ||||||||| | | | || ||| || | ||| || || || | ||| ||| Sbjct 53227 TCAAAGAGATATTCACGCTGAGTAGCATCCTTGATATAAGTGTCGATGAGAAGCGAATAG 53286 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488 ||| ||||| ||||| || || ||||| || || |||||||| | ||||||| | Sbjct 53287 GCTTCGGAATGGATGTTCTCCATCATGATTTGGAAGCCATAGAAACAGCGCGCCTCGGCA 53346 Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAA--TTTTCATTCACTATTCCGTCACTGG 24546 | || ||||| | |||| | ||| | || || || || || || || ||| || Sbjct 53347 ACTTGGACTTCATTTGAAAACC--TCTCCAGAAGGTTCTCGTTGACAATACCATCAGAGG 53404 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTAT 24603 | || || || || | || || || |||| |||| ||| | || Sbjct 53405 CAGCGAAGAAAGCAAGAACGTGCGAGATGAAATGACGCTCGTTGTCATTTAGACGGTTGG 53464 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 |||| || | ||||||||| || | |||| || ||| | ||||| || || ||||| | Sbjct 53465 TCCAGTCGTGGATATCTTTGGAGAGGTCCATCTCCTCCGCAGTCCAGAAAGACGCCTCAG 53524 Query 24664 CCTTTTTATACATATTCCAGAT 24685 |||| || ||||| | |||||| Sbjct 53525 CCTTCTTGTACATTTGCCAGAT 53546 >seq5512 Length=8717 Score = 82.4 bits (90), Expect = 9e-11 Identities = 194/292 (66%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 54278 CCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 ||| ||||||| ||| | ||| ||||| || || || || ||||| ||| | Sbjct 5489 CCAGTGGCACGGATACAATGAATATTAAGACCAATACCTCCGGCGGTTTTACTGATCATG 5430 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || || || |||||||| ||||||||||| || ||||||| |||| || || Sbjct 5429 GCACAATTCTTCAACGTATCGTAGATGCCCTCAATTGAATCATCCTTCATACAAACGAGG 5370 Query 54398 AAACAGCTAGACATTTGGTGACGACTA---GTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 | ||| ||| | | ||| ||||| || || || || || | || || || || Sbjct 5369 A---AGCAAGAGCTGAGTTGAGGACTAGGCGTGCCTGCGTTGAAGAGAGTGGGTGATGCA 5313 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 || || || || |||||| | || || || |||| ||| | ||| || ||| | Sbjct 5312 TGGGTGAAGTATCGTTCAGACATGAGGTTATAAGTCTGAATAACACGGTCGATGTCCGAG 5253 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 54566 ||| || || || || |||||||||| ||||||||| || | ||| ||| Sbjct 5252 CCATGGATCCCGACAGCAACACGCATTATCATGTGCTGTGGACGCTCAGCGA 5201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593635176399600