Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2477 109 4e-19 seq1364 89.7 4e-13 >seq2477 Length=31422 Score = 109 bits (120), Expect = 4e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 45126 ATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||| || || || || ||||||||||||||| || || || ||| |||| Sbjct 19197 ATACCCAGATGGAGTGTCGACTCCTTCTGAATGTTATAATCCGAAAGAGTACGACCGTCC 19138 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || || || ||||| ||||| |||||||| || | ||||||||||||| Sbjct 19137 TCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 19078 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | |||| | ||| || |||| |||||| ||| Sbjct 19077 TGGATCTTAGCCTTGACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAGGTAATGGTC 19018 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| || ||||||||||| Sbjct 19017 TTTCCCGTCAGGGTCTTGACGAAGATTTGCAT 18986 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||||||| || |||||||| ||||| ||||||||||| || |||| | || || | Sbjct 19698 CCAAGTGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCCTCGA 19639 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| |||||||||||||| || | |||||||||||| || Sbjct 19638 GCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAA 19579 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | |||| ||| ||||||| ||| || ||||| | Sbjct 19578 TCTTCGCCTTGACGTTGTCGATCGTGTCAGACGACTCGACCTCCAGGGTGATGGTCTTCC 19519 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || ||||| || || || ||||| Sbjct 19518 CGGTGAGGGTCTTGACGAATATCTGCAT 19491 >seq1364 Length=53523 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || || ||||||||||| |||||||||||||| || || | || | Sbjct 5183 TACCAAGATGAAGGGTGCTCTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCT 5242 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 ||| || || || |||||||||| |||||||| || ||||| | ||||| || || Sbjct 5243 CCAACTGCTTCCCCGCGAATATCAGGCGCTGTTGATCAGGAGGAATCCCCTCTTTATCTT 5302 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||||| ||| || | | | | || | ||| ||||| | ||| || || | Sbjct 5303 GGATTTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCAAGGGTGATGGTTT 5362 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || ||||||||||| || || ||||| Sbjct 5363 TCCCGGTTAGAGTCTTCACGAAAATCTGCAT 5393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395019129569545