Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq168 140 3e-28 seq5512 116 3e-21 seq2477 109 5e-19 seq1364 91.5 1e-13 seq332 84.2 2e-11 >seq168 Length=158170 Score = 140 bits (154), Expect = 3e-28 Identities = 378/572 (66%), Gaps = 25/572 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||| | || || | ||||| Sbjct 53546 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCTTTCTGGACTGCGGAGGAGATGGACCTC 53487 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||| | ||| ||| || | || || ||| | |||| || Sbjct 53486 TCCAAAGATATCCACGACTGGACCAACCGTCTAAATGACAACGAGCGTCATTTCATCTCG 53427 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| || || ||||||||||| |||||||| | | || || Sbjct 53426 CACGTTCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTTCTGGAGAGG 53367 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 |||||| | ||||| ||||| | |||||| | || || || || || ||| | || Sbjct 53366 TTTTCAAATGAAGTCCAAGTTGCCGAGGCGCGCTGTTTCTATGGCTTCCAAATCATGATG 53307 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAA-- 57862 || ||| | ||||| ||| |||||||| |||||||| || || | ||||| | | Sbjct 53306 GAGAACATCCATTCCGAAGCCTATTCGCTTCTCATCGACACTTATATCAAGGATGCTACT 53247 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AA 57919 | || ||| || || || | || ||||| || || || || |||| || Sbjct 53246 CAGCGTGAA---TA-TCTCTTTGATGCCATCGAGACGATTCCTTGCAT---CAAGCGCAA 53194 Query 57920 GGCAGAGTGGTCAATCAAATGGAT----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 |||||| ||| | | | ||||| | ||| | | || || | ||| | | Sbjct 53193 GGCAGAATGGGCCCTTGAGTGGATTTCAGATAAG----AAATCAACATTTGGCGAACGCC 53138 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | | |||||||| || || || ||||| ||||| || || |||||| |||| || | Sbjct 53137 TCGTTGCGTTCGCTGCTGTAGAGGGTATTTTCTTCTCTGGATCGTTTGCGTCAATCTTCT 53078 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 |||||||||| || ||| ||||||| || || || ||| |||||| | || || | Sbjct 53077 GGATGAAGAAGCGTGGCTTGATGCCTGGACTTACTTTTTCCAACGAACTTATCAGTCGTG 53018 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 | || || | || || |||||||||||| || Sbjct 53017 ATGAAGGCATGCACACCGATTTTGCGTGCTTA 52986 >seq5512 Length=8717 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 ||||| || || ||||| | ||||||||| || || | ||| || ||| || ||||| Sbjct 5779 AAAAGGTCAGGGATCCACAAAGCGTAGAAGAGATCCCTGGCACGAGACTCTTCCTTGCCA 5720 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| || || | || || | || || |||||||| || |||| ||| | | Sbjct 5719 TGATTCTTTCGCAGGTCGAGGAAATCAAGAACATCAGCATGCCAAGGTTCGATGTAGATG 5660 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || ||||| || || | ||||||||| ||||| || |||||||| || || | |||| Sbjct 5659 GCGAACGCTCCAGGCCGCTTATTGCCTCCCTGGTCAACGTAACGAGCAGTAGCATCGTAC 5600 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGA 23565 | | ||||||||||| | ||||||||| Sbjct 5599 GCGCGCAGCATCGGCACAATACCGTTGGA 5571 >seq2477 Length=31422 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| || || || || ||| | || || || | || Sbjct 18986 ATGCAAATCTTCGTCAAGACCCTGACGGGAAAGACCATTACCTTGGAAGTCGAGTCTTCA 19045 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| || | || ||||||||| Sbjct 19046 GACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 19105 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || |||||||| ||| | || ||| | ||| | ||||||||| Sbjct 19106 CAGCGTTTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTATAAC 19165 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGG 31400 ||||| || || ||||| || ||||||| Sbjct 19166 ATTCAGAAGGAGTCGACACTCCATCTGG 19193 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || ||||| | || || || | ||| Sbjct 19263 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACTCTGGAGGTCGAGTCTTCC 19322 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||| | || ||||||||| Sbjct 19323 GACACGATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGACCAG 19382 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || || || || ||| | ||||| ||| | ||||| ||| Sbjct 19383 CAGCGCTTGATTTTTGCCGGGAAGCAGCTCGAAGATGGGCGGACCCTCTCGGATTACAAC 19442 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| |||||||| || || | || |||| |||| Sbjct 19443 ATCCAGAAGGAGTCGACACTTCATCTCGTCCTCCGTCTTCGGGGTGGTA 19491 >seq1364 Length=53523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || |||| || |||||||||||| |||| |||||| | || Sbjct 5622 CATGCAGATCTTTGTCAAAACGTTGACTGGGAAAACGATCACCCTCGAAGTTGAATCATC 5563 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || || || || ||| |||||||| | || || ||||| Sbjct 5562 GGATACTATAGACAATGTGAAGGCGAAGATCCAGGATAAGGAAGGAATTCCCCCAGACCA 5503 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || |||||||| || || |||| || | ||| | || ||||| Sbjct 5502 GCAACGCCTCATCTTCGCTGGAAAGCAACTGGAGGATGGTCGCACTCTATCTGACTATAA 5443 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || ||||| || | ||||| || || Sbjct 5442 CATTCAGAAGGAATCTACATTACATCTCGTTCT 5410 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || ||||| |||||| | || ||||| | ||| Sbjct 5393 ATGCAGATTTTCGTGAAGACTCTAACCGGGAAAACCATCACCCTTGAGGTTGAGTCTTCC 5334 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || ||| || || || || | || || || || Sbjct 5333 GATACCATCGACAACGTGAAGGCGAAAATCCAAGATAAAGAGGGGATTCCTCCTGATCAA 5274 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||||| || |||||||| || || |||||||| || | | | ||| | || || || Sbjct 5273 CAGCGCCTGATATTCGCGGGGAAGCAGTTGGAGGA-TGGACGTACTCTTTCTGACTACAA 5215 Query 31372 CATTCAAAAAGAATCGACTCTTCATC-TGGTA 31402 ||||||||| || || ||||||| ||||| Sbjct 5214 CATTCAAAAGGAGAGCACCCTTCATCTTGGTA 5183 >seq332 Length=22363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 ||||| | |||| |||||||||||| || | | || |||| || | | || Sbjct 2133 AAGGCCAATTGGTGCATCAAATGGATAGAAGACACTACTTTGTCGTTTGCAACGCGCTTA 2074 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 | || ||||| || ||||| || || || ||||| |||||| |||| |||||| Sbjct 2073 CTAGCATTCGCAGCAGTCGAGGGAATTTTTTTTTCATCGTCCTTTGCATCAATTTTTTGG 2014 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC-AACGAGTTGATATCGCGCGA 58096 |||||||||| || |||||||| || | | |||| | |||||| | || || || || Sbjct 2013 TTGAAGAAACGAGGACTGATGCCAGG-ATTATGTTTTTCGAACGAGCTTATCTCTCGGGA 1955 Query 58097 CGAGGGTCTCCATACTGATTTTGCG 58121 ||| || || || || || |||||| Sbjct 1954 CGAAGGACTTCACACCGAATTTGCG 1930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445701513128400