Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq168 125 7e-24 seq332 113 4e-20 seq331 107 2e-18 >seq168 Length=158170 Score = 125 bits (138), Expect = 7e-24 Identities = 241/351 (69%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 ||| ||||||||||| || | ||| ||||| | ||| ||||||||||| ||||| || Sbjct 52986 TAAGCACGCAAAATCGGTGTGCATGCCTTCATCACGACTGATAAGTTCGTTGGAAAAAGT 53045 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 | ||| |||||||| || || || || | ||| || |||| ||||| || || || || Sbjct 53046 AAGTCCAGGCATCAAGCCACGCTTCTTCATCCAGAAGATTGACGCAAACGATCCAGAGAA 53105 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| || ||||| || ||||| ||||| | | ||||| ||||| | || ||| || | Sbjct 53106 GAAAATACCCTCTACAGCAGCGAACGCAACGAGGCGTTCGCCAAATGTTGATTTCTTATC 53165 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 || ||||| | |||||||| | || || || || || || || || || Sbjct 53166 TGAAATCCACTCAAGGGCCCATTCTGCCTTGCGCTTGATGCAAGGAATCGTCTCGATGGC 53225 Query 14108 ATTAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGC-T 14164 || ||| | |||||| || ||| | |||| || || || || || || |||| Sbjct 53226 ATCAAAGAGATATTCACGCTGAGTAGCATCCTTG--ATATAAGTGTCGATGAG-AAGCGA 53282 Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 ||| ||| || || ||||| ||||| || || || ||||| || || Sbjct 53283 ATAGGCTTCGGAATGGATGTTCTCCATCATGATTTGGAAGCCATAGAAACA 53333 >seq332 Length=22363 Score = 113 bits (124), Expect = 4e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 |||||| || ||||| || || || | | ||||| ||||| ||||| |||||| Sbjct 1930 CGCAAATTCGGTGTGAAGTCCTTCGTCCCGAGAGATAAGCTCGTTCGAAAAACATAATCC 1989 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 |||||||| ||||||||| || |||||||| |||| ||||| ||| ||||| || || Sbjct 1990 TGGCATCAGTCCTCGTTTCTTCAACCAAAAAATTGATGCAAAGGACGATGAAAAAAAAAT 2049 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 |||||| ||||| || || |||| ||| || | ||||||| Sbjct 2050 TCCCTCGACTGCTGCGAATGCTAGTAAGCGCGTTGCAAACGA 2091 >seq331 Length=21972 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 15725 ATAAGTTCGTTCGAAAAGCATAATCCTGGCATCAATCCTCGTTTTTTCAACCAAAATATA 15666 Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGT 14024 | || || || ||||| || || |||||||| || || || |||| ||| ||| Sbjct 15665 GATGCGAAGGATGATGAAAAAAAAATCCCCTCAACCGCTGCGAATGCTAGTAAGCGT 15609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479658169593000