Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1364 102 6e-17 seq2477 86.0 5e-12 >seq1364 Length=53523 Score = 102 bits (112), Expect = 6e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 42901 ACCAA-ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||| ||| | |||||||||||||| | ||||| || || | |||||| | || || Sbjct 5184 ACCAAGATGAAGGGTGCTCTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCTC 5243 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || || || || |||| ||||||||||| | || | || ||||| || Sbjct 5244 CAACTGCTTCCCCGCGAATATCAGGCGCTGTTGATCAGGAGGAATCCCCTCTTTATCTTG 5303 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| | | || || || | | || ||| || ||| || || | || || ||||| Sbjct 5304 GATTTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCAAGGGTGATGGTTTT 5363 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||||||||| ||||| ||||| |||||| Sbjct 5364 CCCGGTTAGAGTCTTCACGAAAATCTGCATT 5394 >seq2477 Length=31422 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||| || | || || | || || | || || |||||||| Sbjct 19454 CTCCTTCTGGATGTTGTAATCCGAGAGGGTCCGCCCATCTTCGAGCTGCTTCCCGGCAAA 19395 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||| ||||| || |||| || | ||||| || || |||| | ||||| | Sbjct 19394 AATCAAGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACGTT 19335 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| || |||||| || | || || || || ||||| ||||| || || Sbjct 19334 GTCGATCGTGTCGGAAGACTCGACCTCCAGAGTGATGGTCTTGCCGGTGAGAGTCTTGAC 19275 Query 43098 AAAAATTTGCAT 43109 ||| || ||||| Sbjct 19274 AAAGATCTGCAT 19263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381315474715410