Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6655 113 7e-21 seq2058 96.9 5e-16 seq1262 96.9 5e-16 seq1154 87.8 3e-13 >seq6655 Length=2135 Score = 113 bits (124), Expect = 7e-21 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| || || |||||||||||||| ||||||||||| || || |||||| |||| Sbjct 1777 AGGTATCACAAAACCTGCTATCCGTCGTCTCGCTCGTCGTGGAGGTGTGAAGCGTATCTC 1718 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTT 16585 ||| | |||| || |||| ||||| ||| ||||||||||||||| | | |||| Sbjct 1717 TGGTCTCATCTACGAGGAGACTCGTGGTGTATTGAAGATCTTCCTCGAAAACGTT 1663 >seq2058 Length=44486 Score = 96.9 bits (106), Expect = 5e-16 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 16461 ATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCA 16520 ||||| || ||| ||||||||||||||||| || ||||| || |||||||| ||||| | Sbjct 412 ATAACCTCTTAGGTATCACCAAGCCAGCTATTCGCCGTCTCGCGCGTCGTGGGGGAGTTA 353 Query 16521 AGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 ||||| | ||||| | |||| ||||| | |||| ||| | || |||||| | ||| Sbjct 352 AGCGTATTTCTGGGCTTATCTACGAAGAAACCCGTGGTGTGCTCAAAATCTTCTTGGAGA 293 Query 16581 CCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 || |||| ||| | || || || ||||| || || || Sbjct 292 ATGTCATCCGAGATTCCGTCACATACACTGAGCATGCCAAGCG 250 >seq1262 Length=22759 Score = 96.9 bits (106), Expect = 5e-16 Identities = 115/153 (75%), Gaps = 5/153 (3%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||| ||||| ||||||||||| |||||||| ||| |||| || | ||||||| Sbjct 1209 GCTATCCGCCGTCTCGCTCGTCGTGGAGGAGTCAAACGTATCTCGGGCCTCATCTATGAG 1150 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTA 16605 |||| || | ||| | ||||||||||| | | || |||| ||| || || || || Sbjct 1149 GAGACCCGCGGAGTTCTCAAGATCTTCCTTGAAAATGTCATCCGGGATTCTGTTACA-TA 1091 Query 16606 TACCGAGCACGCTAAACGTAAGACTGTCACCTC 16638 ||| || ||||| ||||| | ||||||||| Sbjct 1090 TACGGAACACGCCAAACG---GTATGTCACCTC 1061 >seq1154 Length=25594 Score = 87.8 bits (96), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||||||||| || |||||||| || || || ||| ||||||| | |||| || Sbjct 25117 GCTATCCGTCGTCTCGCCCGTCGTGGAGGTGTGAAACGTATCTCTGGTCTCATCTACGAG 25058 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| |||| ||| |||||||||||||| ||| ||| Sbjct 25057 GAGACCCGTGGTGTATTGAAGATCTTCCTTGAGAACGT 25020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064552894985