Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq168 170 2e-37 seq5512 86.0 8e-12 >seq168 Length=158170 Score = 170 bits (188), Expect = 2e-37 Identities = 377/562 (67%), Gaps = 10/562 (2%) Strand=Plus/Plus Query 32658 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 || || || |||||| ||| | || || || | ||| || | |||||||||||| || Sbjct 52987 AAGCACGCAAAATCGGTGTGCATGCCTTCATCACGACTGATAAGTTCGTTGGAAAAAGTA 53046 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 ||||| ||||| | ||||||||| || | ||| || || |||||||| |||||||| ||| Sbjct 53047 AGTCCAGGCATCAAGCCACGCTTCTTCATCCAGAAGATTGACGCAAACGATCCAGAGAAG 53106 Query 32778 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 32837 ||||| || ||||| || || || |||| || | || ||| | | | | || | Sbjct 53107 AAAATACCCTCTACAGCAGCGAACGCAACGAGGCGTTCGCCAAATGTTGATTTCTTATCT 53166 Query 32838 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 32894 ||||||| | ||||| || ||||| || | ||||| || ||||| || ||| Sbjct 53167 GAAATCCACTCAAGGGCCCATTCTGCCTTGCGCTTGATGCAAGGAATCGTCTCGATGGCA 53226 Query 32895 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATAC 32954 | ||||||||| | | | || ||| || | ||| || || || | ||| ||| Sbjct 53227 TCAAAGAGATATTCACGCTGAGTAGCATCCTTGATATAAGTGTCGATGAGAAGCGAATAG 53286 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTA 33014 ||| ||||| ||||| || || ||||| || || ||||| || | ||||||| | Sbjct 53287 GCTTCGGAATGGATGTTCTCCATCATGATTTGGAAGCCATAGAAACAGCGCGCCTCGGCA 53346 Query 33015 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAA--TTTTCATTCACTATTCCGTCACTGG 33072 | || ||||| | |||| | ||| | || || || || || || || ||| || Sbjct 53347 ACTTGGACTTCATTTGAAAACC--TCTCCAGAAGGTTCTCGTTGACAATACCATCAGAGG 53404 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTAT 33129 | || || || || | || || || |||| |||| ||| | || Sbjct 53405 CAGCGAAGAAAGCAAGAACGTGCGAGATGAAATGACGCTCGTTGTCATTTAGACGGTTGG 53464 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 |||| || | ||||||||| || | |||| || ||| | ||||| || || ||||| | Sbjct 53465 TCCAGTCGTGGATATCTTTGGAGAGGTCCATCTCCTCCGCAGTCCAGAAAGACGCCTCAG 53524 Query 33190 CCTTTTTATACATATTCCAGAT 33211 |||| || ||||| | |||||| Sbjct 53525 CCTTCTTGTACATTTGCCAGAT 53546 >seq5512 Length=8717 Score = 86.0 bits (94), Expect = 8e-12 Identities = 195/292 (67%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 ||| ||||||| ||| | ||| ||||| || || || || ||||| ||| | Sbjct 5489 CCAGTGGCACGGATACAATGAATATTAAGACCAATACCTCCGGCGGTTTTACTGATCATG 5430 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || || || |||||||| ||||||||||| || ||||||| |||| || || Sbjct 5429 GCACAATTCTTCAACGTATCGTAGATGCCCTCAATTGAATCATCCTTCATACAAACGAGG 5370 Query 63440 AAACAGCTAGACATTTGGTGACGACTA---GTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496 | ||| ||| | | ||| ||||| || || || || || | || || || || Sbjct 5369 A---AGCAAGAGCTGAGTTGAGGACTAGGCGTGCCTGCGTTGAAGAGAGTGGGTGATGCA 5313 Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63556 || || || || |||||| | || || || |||| |||| | ||| || ||| | Sbjct 5312 TGGGTGAAGTATCGTTCAGACATGAGGTTATAAGTCTGAATAACACGGTCGATGTCCGAG 5253 Query 63557 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63608 ||| || || || || |||||||||| ||||||||| || | ||| ||| Sbjct 5252 CCATGGATCCCGACAGCAACACGCATTATCATGTGCTGTGGACGCTCAGCGA 5201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633539766942000