Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1364 125 6e-24 seq2477 105 6e-18 seq786 82.4 6e-11 >seq1364 Length=53523 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| ||||||| ||||| |||| ||||| || || | || Sbjct 5393 ATGCAGATTTTCGTGAAGACTCTAACCGGGAAAACCATCACCCTTGAGGTTGAGTCTTCC 5334 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || ||||| ||||| || ||||| ||||| || |||||| Sbjct 5333 GATACCATCGACAACGTGAAGGCGAAAATCCAAGATAAAGAGGGGATTCCTCCTGATCAA 5274 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || ||||| || || || ||||| |||||| || || | || || |||||| Sbjct 5273 CAGCGCCTGATATTCGCGGGGAAGCAGTTGGAGGATGGACGTACTCTTTCTGACTACAAC 5214 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 |||||||| || |||| | ||| Sbjct 5213 ATTCAAAAGGAGAGCACCCTTCAT 5190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 |||||||| || |||||||||||||| || || || |||||| | |||||| || ||| Sbjct 5744 ATTCCACCTGACCAACAACGTCTTATCTTCGCTGGAAAACAGCTCGAGGATGGTCGAACC 5685 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 | || |||||||||||||| ||||| || ||| Sbjct 5684 TTGTCTGATTACAACATTCAGAAAGAGTCTACC 5652 >seq2477 Length=31422 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | | Sbjct 19491 ATGCAGATATTCGTCAAGACCCTCACCGGGAAGACCATCACCCTGGAGGTCGAGTCGTCT 19550 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||| || || ||||| ||| Sbjct 19551 GACACGATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAA 19610 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | |||||| |||||| |||| || |||||| Sbjct 19611 CAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTCTCGGACTACAAC 19670 Query 22399 ATTCAAAAAGA 22409 || || ||||| Sbjct 19671 ATCCAGAAAGA 19681 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || ||||||| || || || | || Sbjct 19263 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACTCTGGAGGTCGAGTCTTCC 19322 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || ||||||||||| || ||||| ||||| || Sbjct 19323 GACACGATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGACCAG 19382 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || |||||||| || ||| | || ||| || ||| |||| ||||||||| Sbjct 19383 CAGCGCTTGATTTTTGCCGGGAAGCAGCTCGAAGATGGGCGGACCCTCTCGGATTACAAC 19442 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 19443 ATCCAGAAGGAGTCGAC 19459 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || | ||||| || | | Sbjct 18986 ATGCAAATCTTCGTCAAGACCCTGACGGGAAAGACCATTACCTTGGAAGTCGAGTCTTCA 19045 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||||||||| ||||| || Sbjct 19046 GACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 19105 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| ||| | ||||| || || | || ||||| ||| Sbjct 19106 CAGCGTTTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTATAAC 19165 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 19166 ATTCAGAAGGAGTCGAC 19182 >seq786 Length=4238 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 22305 AATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACA 22364 ||| |||||||||||||||||||| || ||||||||| | ||||| |||| ||| ||||| Sbjct 77 AATACAAGACAAGGAGGGTATTCCTCCTGATCAACAAAGACTTATCTTTGACGGAAAACA 136 Query 22365 GTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 | | || || || ||| | ||| |||||||| ||| Sbjct 137 GCTTGAAGACGGACGTACCTTGAGCGACTACAACATCCAA 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419668430759425