Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1364 158 3e-33 seq2477 141 2e-28 seq168 100 7e-16 >seq1364 Length=53523 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 ||||||| ||||| || ||||| || || ||||| | || || ||||| || || || Sbjct 5188 AGATGAAGGGTGCTCTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCTCCAAC 5247 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || ||||| ||||| ||||||||| | || || || |||||||| |||||| Sbjct 5248 TGCTTCCCCGCGAATATCAGGCGCTGTTGATCAGGAGGAATCCCCTCTTTATCTTGGATT 5307 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| |||||||| || || | |||| || || || || || ||||| || |||||| Sbjct 5308 TTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCAAGGGTGATGGTTTTCCCG 5367 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || |||||||| ||||| ||||||||| Sbjct 5368 GTTAGAGTCTTCACGAAAATCTGCATT 5394 Score = 156 bits (172), Expect = 1e-32 Identities = 174/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || |||||||| | || ||| || || || |||||||| | Sbjct 5394 TCCACCACGCAGGCGGAGAACGAGATGTAATGTAGATTCCTTCTGAATGTTATAGTCAGA 5453 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || || || | ||| ||||| |||||||| || || || || ||||| Sbjct 5454 TAGAGTGCGACCATCCTCCAGTTGCTTTCCAGCGAAGATGAGGCGTTGCTGG---TCTGG 5510 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | |||||||| ||||||||||| ||||| ||||| || ||||||| ||| ||||| Sbjct 5511 GGGAATTCCTTCCTTATCCTGGATCTTCGCCTTCACATTGTCTATAGTATCCGATGATTC 5570 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| |||||||| ||||| |||| || ||||| || |||||||| Sbjct 5571 AACTTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTGACAAAGATCTGCAT 5621 >seq2477 Length=31422 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||||| ||||| ||||| || ||||| | ||| ||||| || || || | || Sbjct 19693 TGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCCTCGAGCTGC 19634 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||||||||||||| ||||| || || || ||||| || ||| Sbjct 19633 TTGCCAGCAAAGATCAGACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTC 19574 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | || ||| || || || || ||||| ||||||||||| Sbjct 19573 GCCTTGACGTTGTCGATCGTGTCAGACGACTCGACCTCCAGGGTGATGGTCTTCCCGGTG 19514 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||||||||| Sbjct 19513 AGGGTCTTGACGAATATCTGCAT 19491 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | ||| || || ||||| || | |||||| || |||||| Sbjct 18892 TCCTTCTGAATGTTGTAGTCAGAGAGGGTACGCCCGTCCTCGAGTTGTTTCCCAGCGAAG 18833 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| || || | ||||| |||||||| || ||||| || || ||||| || Sbjct 18832 ATCAAACGTTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTA 18773 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || | ||||| ||||| || || || ||||||||| Sbjct 18772 TCAATCGTGTCAGAGGACTCAACCTCCAAAGTGATGGTCTTGCCCGTGAGGGTCTTGACG 18713 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 18712 AAGATCTGCATT 18701 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||||| || || || ||||| || || || | | Sbjct 19489 CCACCCCGAAGACGGAGGACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAATCCGAG 19430 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || || || || || |||| ||||| || || Sbjct 19429 AGGGTCCGCCCATCTTCGAGCTGCTTCCCGGCAAAAATCAAGCGCTGCTGGTCGGGAGGA 19370 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || || || ||||| || || | ||| || || || Sbjct 19369 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACC 19310 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| ||||||||||| || |||||||| Sbjct 19309 TCCAGAGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 19263 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||| ||||| || ||||| || || || || | ||| || || || ||| Sbjct 18524 CCTTCCTTATCTTGGATCTTGGCTTTGACATTGTCGATGGTATCCGAGGACTCGACCTCG 18465 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || || |||||||||||||| |||||||| Sbjct 18464 AGGGTGATAGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 18421 >seq168 Length=158170 Score = 100 bits (110), Expect = 7e-16 Identities = 121/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT-CTT 269210 ||||| |||||| | || | ||| || || ||||| ||||| || || || | ||| Sbjct 52820 ATCGGCATGAATTCTGACTTGATGTGCCAGTACATCGAGTTCGTTGCCGACCGACTACTT 52761 Query 269211 CACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACT 269270 || | || || | || || ||||||||||||| ||||||||||| ||| ||||| | Sbjct 52760 GTCG-CTCTGGGCAACGACAAGGTGTACAATTCGACGAATCCCTTCGACTTCATGGACAT 52702 Query 269271 AATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGT 269312 ||||| ||| | || || ||||| ||||| ||||||||||| Sbjct 52701 GATTTCACTCCAGGGGAAAACGAATTTCTTTGAAAAGCGTGT 52660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179478393720310