Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq168 109 7e-19 seq5512 84.2 3e-11 >seq168 Length=158170 Score = 109 bits (120), Expect = 7e-19 Identities = 354/539 (66%), Gaps = 17/539 (3%) Strand=Plus/Plus Query 127506 TGAAGAGTTC-CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 127564 |||||||| ||| ||||| || ||| | || || ||||| ||| ||||| || Sbjct 52979 TGAAGAGTAAGCAC-GCAAAATCGGTGTGCATGCCTTCATCACGACTGATAAGTTCGTTG 53037 Query 127565 GAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAG 127624 || || || || ||||| | || |||||||||| |||||| || | ||| || Sbjct 53038 GAAAAAGTAAGTCCAGGCATCAAGCCACGCTTCTTCATCCAGAAGATTGACGCAAACGAT 53097 Query 127625 CCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGG 127684 ||||||||||| || ||||| ||| |||||||||| || || ||| |||| | Sbjct 53098 CCAGAGAAGAAAATACCCTCTACAGCAGCGAACGCAACGAGGCGTTCGCCAAATG---TT 53154 Query 127685 GACTTTGTATC---AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACG 127741 || || |||| || ||||| | ||||| | |||||| || ||| || || | Sbjct 53155 GATTTCTTATCTGAAATCCACTCAAGGGCCCATTCTGCCTTGCGCTTGATGCAAGGAATC 53214 Query 127742 GTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA--TGGATCTTTGATGTACTTATCTA 127799 |||| ||| || |||||||| | ||| |||| | ||| ||||| || | || | Sbjct 53215 GTCTCGATGGCATCAAAGAGAT-ATTC-ACGCTGAGTAGCATCCTTGATATAAGTGTCGA 53272 Query 127800 TGAGTTTTGAATATGTTTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAA 127858 |||| ||||| | |||| |||| | | ||| || | || | | |||||| Sbjct 53273 TGAGAAGCGAATAGGCTTCGGAATGGATGTTCTCCATCAT-GATTTGGAAGCCATAGAAA 53331 Query 127859 GAGCGCGCTTCGCTTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACA 127918 ||||||| ||| | || || |||| | ||| | | | ||||| ||| Sbjct 53332 CAGCGCGCCTCGGCAACTTGGACTTCATTTGAAAACCTCTCCAGAAGGTTCTCGTTGACA 53391 Query 127919 ATTCCATCGGACCCAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCG 127978 || ||||| || |||| || || || || | | | ||||| | | || || || Sbjct 53392 ATACCATCAGAGGCAGCGAAGAAAGCAAGAACGTGCGAGATGAAATGACGCTCGTTGTCA 53451 Query 127979 TTCA---GGGTCTTCCAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 || | || | ||||||||| || ||| || ||||| || | ||||||||||||||| Sbjct 53452 TTTAGACGGTTGGTCCAGTCGTGGATATCTTTGGAGAGGTCCATCTCCTCCGCAGTCCA 53510 >seq5512 Length=8717 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/285 (67%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 116113 GTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 ||||| || ||||| || ||| |||| ||||||||| ||||| || || |||| || Sbjct 6525 GTCTCGTAAGGGCCATCTTTCTCAGCCATTTCGGAGCTTGCCTCAAGTGCACCGTGGTAT 6466 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 ||||| ||||| || || ||| | | ||||||| || | ||||| || | | | | Sbjct 6465 ATTGTTTCAAAGATTTGAATATTAAGTTCCTTGGCAGCGGCAGAATCGAAGGGCATATGA 6406 Query 116233 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | || || || ||||||||||| ||||| | || || ||||| || | ||| Sbjct 6405 AGCGCCATGAAAGTGTCGGCGAGACCTTGTACACCAACACCGATGGGGCGGTGACGCATG 6346 Query 116293 TTAGACTTTCGAGCGGTCTCC----ACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 || || ||| ||| || | | || ||| | || ||||| | | ||| || Sbjct 6345 TTCGA---TCG-GCGAGCTTCGGGGATAGGGTAATAGTTGACGTCGATGATGCGATTGAG 6290 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 116393 || | || |||||||| |||| |||||||| || | | |||| Sbjct 6289 GTTGTAGGCAACAACCTTGGTGACATCATGAAGTTTCTGGAAATC 6245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613417896358200