Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2477 138 1e-27 seq1364 107 2e-18 seq142 86.0 7e-12 >seq2477 Length=31422 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||| ||||| || || || || ||| | || ||| Sbjct 19471 ACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTCCGCCCATCTTCG 19412 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| ||||| || ||||||||||||||||||| || | | |||||||| | Sbjct 19411 AGCTGCTTCCCGGCAAAAATCAAGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGG 19352 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | ||||||| || || || |||| |||||||| || Sbjct 19351 ATCTTAGCCTTGA-CGTTGTCGATCGTGTCGGAAGACTCGACCTCCAGAGTGATGGTCTT 19293 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || |||||||| ||||| Sbjct 19292 GCCGGTGAGAGTCTTGACAAAGATCTGCAT 19263 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 46386 CCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGA 46445 ||||||| | ||| |||||| || || || || || || ||||| || |||| |||| Sbjct 19193 CCAGATGGAGTGTCGACTCCTTCTGAATGTTATAATCCGAAAGAGTACGACCGTCCTCGA 19134 Query 46446 GCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 46505 |||||||||| || || ||||| ||||||||||||| || | | |||||||||| || Sbjct 19133 GCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGA 19074 Query 46506 TCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGC 46565 |||| ||||| | | | ||||| || || || |||| || ||||| || | Sbjct 19073 TCTTAGCCTTGACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAGGTAATGGTCTTTC 19014 Query 46566 CCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| || || || ||||||||||| Sbjct 19013 CCGTCAGGGTCTTGACGAAGATTTGCAT 18986 Score = 125 bits (138), Expect = 8e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || ||||| || ||||| |||||||| || || ||||| | || |||||||||||||| Sbjct 19687 GTGCTCTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCCTCGAGCTGCTTGCCA 19628 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || |||| ||||| ||||||| || | || |||||||||| |||||| |||| Sbjct 19627 GCAAAGATCAGACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTG 19568 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | |||||| ||| || || |||| |||||||| || || || || || Sbjct 19567 A-CGTTGTCGATCGTGTCAGACGACTCGACCTCCAGGGTGATGGTCTTCCCGGTGAGGGT 19509 Query 46576 TTTAACAAAGATTTGCAT 46593 || || || || ||||| Sbjct 19508 CTTGACGAATATCTGCAT 19491 >seq1364 Length=53523 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| |||||| ||||| || || || ||||| ||||||||||| | || || Sbjct 5413 ACGAGATGTAATGTAGATTCCTTCTGAATGTTATAGTCAGATAGAGTGCGACCATCCTCC 5472 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || ||||| || | ||| |||||||| | || | | ||||| ||| | Sbjct 5473 AGTTGCTTTCCAGCGAAGATGAGGCGTTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGG 5532 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||| | | | | || || ||||| || || | ||||| ||||| Sbjct 5533 ATCTTCGCCTTCACATTGTCTATAGTATCCGATGATTCAACTTCGAGGGTGATCGTTTTC 5592 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||| |||||||| ||||| Sbjct 5593 CCAGTCAACGTTTTGACAAAGATCTGCAT 5621 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| | || ||||||||||| || |||||||| || ||||| || | || || | | Sbjct 5188 AGATGAAGGGTGCTCTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCTCCAAC 5247 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 ||||| || |||||||||| |||||| || || | || | | ||| || || ||| Sbjct 5248 TGCTTCCCCGCGAATATCAGGCGCTGTTGATCAGGAGGAATCCCCTCTTTATCTTGGATT 5307 Query 46508 TTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCC 46566 ||| ||| | ||| | | | || ||| || || || || | ||||||||||| || Sbjct 5308 TTCGCCTTCA-CGTTGTCGATGGTATCGGAAGACTCAACCTCAAGGGTGATGGTTTTCCC 5366 Query 46567 CGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || || || || || |||||| Sbjct 5367 GGTTAGAGTCTTCACGAAAATCTGCATT 5394 >seq142 Length=14559 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||||||||| ||||||||| || ||||| | || || Sbjct 5215 ACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCC 5274 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 ||||||||||||||||| |||| ||| ||||| |||| Sbjct 5275 AGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCGG 5311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565156122485400