Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1364 105 4e-17 seq2477 91.5 1e-12 seq1235 86.0 4e-11 >seq1364 Length=53523 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || ||||| | |||| ||| || || ||||| |||| |||||| Sbjct 5400 ACGCAGGCGGAGAACGAGATGTAATGTAGATTCCTTCTGAATGTTATAGTCAGATAGAGT 5459 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || |||||||||||||| || || || ||||| || || || |||||||| Sbjct 5460 GCGACCATCCTCCAGTTGCTTTCCAGCGAAGATGAGGCGTTGCTGGTCTGGGGGAATTCC 5519 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || || ||||| || ||| || |||||||| | || | || ||| | Sbjct 5520 TTCCTTATCCTGGATCTTCGCCTTCACATTGTCTATAGTATCCGATGATTCAA-CTTCGA 5578 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || ||||| || || | || || || || || || Sbjct 5579 GGGTGATCGTTTTCCCAGTCAACGTTTTGACAAAGATCTG 5618 Score = 89.7 bits (98), Expect = 3e-12 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||||||||| || || || || || || || |||| ||||| | ||| || | Sbjct 5186 CAAGATGAAGGGTGCTCTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCTCCA 5245 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 ||||| || || || || || || ||||||||||||||||| || || || ||||| | Sbjct 5246 ACTGCTTCCCCGCGAATATCAGGCGCTGTTGATCAGGAGGAATCCCCTCTTTATCTTGGA 5305 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 | || || || || || ||||| | | | || |||||||| || ||||| Sbjct 5306 TTTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAA-CCTCAAGGGTGATGGTTTTC 5364 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| |||||||| |||||||| || Sbjct 5365 CCGGTTAGAGTCTTCACGAAAATCTG 5390 >seq2477 Length=31422 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || ||||||||||| || || | || ||||| | || || Sbjct 19483 CGAAGACGGAGGACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTC 19424 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || ||||| || |||||||| | || || || || |||||||||||| Sbjct 19423 CGCCCATCTTCGAGCTGCTTCCCGGCAAAAATCAAGCGCTGCTGGTCGGGAGGAATTCCT 19364 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||||||||| ||||| ||||| || || || || | | | | || || Sbjct 19363 TCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGA-CCTCCAG 19305 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||||||||| || || || || Sbjct 19304 AGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTG 19266 >seq1235 Length=84146 Score = 86.0 bits (94), Expect = 4e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 474359 AGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAAT 474418 |||||||| | |||||||||||||| | || || || || ||||| ||||| ||||| Sbjct 69016 AGTTGTGTTGGTGTTTGGCAAAATGATCGTGTTGAGATCATCGCCAACGACCAGGGTAAC 69075 Query 474419 AGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCT 474478 |||| || || || ||||| || || | || | ||| | |||||| || ||||| || Sbjct 69076 CGAACTACCCCTTCTTATGTCTCCTTCTCCGACAGTGAGCGTCTTATCGGCGATGCCGCA 69135 Query 474479 AAATATCAAG 474488 ||| | |||| Sbjct 69136 AAAAACCAAG 69145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267679689448460