Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2477 116 4e-21 seq1364 86.0 6e-12 >seq2477 Length=31422 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||| | || | || ||||||||||| || Sbjct 19459 GTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTCCGCCCATCTTCGAGCTGCTTCCCG 19400 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| | ||||||||||||||||| || ||||||||||| |||||| |||| Sbjct 19399 GCAAAAATCAAGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTG 19340 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | |||||||| | ||| || || | |||| ||| |||||||| ||||| Sbjct 19339 ACGTTGTCGATCGTGTCGGAAGACTCGACCTCCAGAGTGATGGTCTTGCCGGTGAGAGTC 19280 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 19279 TTGACAAAGATCTGCAT 19263 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||||||||| || ||||| || | ||| ||| | ||||||||||||||||| || Sbjct 19682 CTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCA-TCCTCGAGCTGCTTGCCAGCAA 19624 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || ||||| |||||||| |||||||| |||||||| ||||| ||||| | Sbjct 19623 AGATCAGACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGT 19564 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | |||||| | | ||| || || | ||||| ||| || ||||| || || || | Sbjct 19563 TGTCGATCGTGTCAGACGACTCGACCTCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTGA 19504 Query 133648 CGAAAATCTGCAT 133660 |||| |||||||| Sbjct 19503 CGAATATCTGCAT 19491 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| ||||| || ||||| || | || | ||||||||| || Sbjct 18905 ATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTACGCCCGTCCTCGAGTTG 18846 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 || || ||| | || | || |||||||| || ||||||||||| ||||| |||||| Sbjct 18845 TTTCCCAGCGAAGATCAAACGTTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGGATCTT 18786 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | |||| |||||| | || ||| || || | |||| ||| ||||| || Sbjct 18785 GGCCTTCACATTATCAATCGTGTCAGAGGACTCAACCTCCAAAGTGATGGTCTTGCCCGT 18726 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| |||||||| Sbjct 18725 GAGGGTCTTGACGAAGATCTGCAT 18702 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || || ||||| | | | | |||| ||||||||||||||||| Sbjct 19182 GTCGACTCCTTCTGAATGTTATAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTGC 19125 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | |||||||||||||| || || || |||||||| |||||| || Sbjct 19124 CAGCAAAGATCAAACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTAGCCT 19065 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | ||| || || | ||| | ||| || || ||||| | Sbjct 19064 TGACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAGGTAATGGTCTTTCCCGTCAGGG 19005 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 19004 TCTTGACGAAGATTTGCAT 18986 >seq1364 Length=53523 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | |||||| |||||| | || || ||||| || || ||||| || || || || Sbjct 5239 TCCTCCAACTGCTTCCCCGCGAATATCAGGCGCTGTTGATCAGGAGGAATCCCCTCTTTA 5298 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | || | || |||| | ||| || || | ||||| | Sbjct 5299 TCTTGGATTTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCAAGGGTGATG 5358 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| ||||| || |||||||||||||| Sbjct 5359 GTTTTCCCGGTTAGAGTCTTCACGAAAATCTGCAT 5393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483350432059800