Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2477 192 1e-43 seq1364 140 8e-28 seq142 98.7 2e-15 seq786 91.5 3e-13 >seq2477 Length=31422 Score = 192 bits (212), Expect = 1e-43 Identities = 175/221 (79%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| || ||||| || ||||| || |||||||| ||||||| |||||| Sbjct 19483 CGAAGACGGAGGACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTC 19424 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| |||||||| || || || || | ||| || ||||| ||||||| |||| Sbjct 19423 CGCCCATCTTCGAGCTGCTTCCCGGCAAAAATCAAGCGCTGCTGGTCGGGAGGAATTCCT 19364 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| |||||||| || ||||| ||||| ||||| || || ||||| ||| Sbjct 19363 TCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCCAGA 19304 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||||||||| ||||| | |||||| Sbjct 19303 GTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 19263 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||| |||||| |||||||| || |||| ||||| | ||||| || ||||| Sbjct 19694 GTGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCCTCGAGCTG 19635 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| || ||||| || || |||||||| || || | || ||||||||||| ||||| Sbjct 19634 CTTGCCAGCAAAGATCAGACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTT 19575 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| ||||| |||||||| || ||||| || ||||| ||||| || || Sbjct 19574 CGCCTTGACGTTGTCGATCGTGTCAGACGACTCGACCTCCAGGGTGATGGTCTTCCCGGT 19515 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | |||||| Sbjct 19514 GAGGGTCTTGACGAATATCTGCAT 19491 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 || || || || ||||| || || ||||||||||||| ||| || | || || || ||| Sbjct 19191 AGATGGAGTGTCGACTCCTTCTGAATGTTATAATCCGAAAGAGTACGACCGTCCTCGAGC 19132 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| || ||||| | || || ||||| || |||| || ||||||||||||||| Sbjct 19131 TGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATC 19072 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || || || ||||||||||| || || || || | || || ||||||||| Sbjct 19071 TTAGCCTTGACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAGGTAATGGTCTTTCCC 19012 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | ||||| Sbjct 19011 GTCAGGGTCTTGACGAAGATTTGCAT 18986 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||| ||||| || || || || ||||| | |||||| | ||||| Sbjct 18685 AGGACGAGGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGCCCATCC 18626 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || |||||||| || |||||||| | || || || ||||| || Sbjct 18625 TCGAGCTGCTTCCCAGCGAAGATCAAACGCTGCTGATCAGGGGG 18582 >seq1364 Length=53523 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || || || |||||||| || | || || | ||||| ||||| ||||| || Sbjct 5425 GTAGATTCCTTCTGAATGTTATAGTCAGATAGAGTGCGACCATCCTCCAGTTGCTTTCCA 5484 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| |||||||| ||||| || |||| ||||||||| ||||||||||| ||| Sbjct 5485 GCGAAGATGAGGCGTTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGGATCTTCGCCTTC 5544 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || || || || || |||||| ||||| |||||||| || || || | || Sbjct 5545 ACATTGTCTATAGTATCCGATGATTCAACTTCGAGGGTGATCGTTTTCCCAGTCAACGTT 5604 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 5605 TTGACAAAGATCTGCAT 5621 Score = 102 bits (112), Expect = 2e-16 Identities = 90/111 (81%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || |||||||| || ||||| ||||| | | ||| | ||||| Sbjct 5638 AGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAAGGTTCGACCATCC 5697 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||| || || ||||||||||| |||||||||||||| |||| |||| Sbjct 5698 TCGAGCTGTTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGTGGAA-TCCT 5747 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||| ||||| || || || || || ||||| ||||| ||| ||||| Sbjct 6081 CCTTCCTTGTCTTGGATTTTGGCCTTGACATTATCAATGGTATCAGAAGATTCGACCTCA 6140 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||||||||| || || ||||| ||||| | |||||| Sbjct 6141 AGGGTGATCGTCTTTCCAGTAAGGGTCTTCACAAAGATCTGCAT 6184 >seq142 Length=14559 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| ||||| || ||||| ||||||||||| || || ||||| | ||||| Sbjct 5212 AGGACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 5271 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| |||||||| |||||||| || || || || Sbjct 5272 TCCAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCGGGGGG 5315 >seq786 Length=4238 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/131 (78%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 210929 TTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAA 210987 ||||||||| || || | ||||| | | ||| ||||| ||||| || || | ||||||| Sbjct 176 TTGGATGTTGTAGTCGCTCAAGG-TACGTCCGTCTTCAAGCTGTTTTCCGTCAAAGATAA 118 Query 210988 GGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT-TTCACGTTTTCG 211046 | | |||||| |||||||||| || |||||||| || || | ||| ||||||||||| Sbjct 117 GTCTTTGTTGATCAGGAGGAATACCCTCCTTGTCTTGTAT-TCGTGTCTTCACGTTTTCC 59 Query 211047 ATGGTGTCAGA 211057 || ||||| || Sbjct 58 ATAGTGTCGGA 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158979052710425