Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepista_20sordida_20[genbank_20GCA_5F900168675.1_202017-06-15] 11,645 sequences; 56,651,772 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2477 104 2e-17 seq1364 100 2e-16 >seq2477 Length=31422 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||||||||| || || |||||| | || ||||| ||| | Sbjct 18701 AATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACTTTGGAGGTTGAGTCCTC 18760 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || || ||||||||||| | || || || | Sbjct 18761 TGACACGATTGATAATGTGAAGGC-CAAGATCCAAGACAAAGAAGGCATCCCCCCTGACC 18819 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||||| || || || || |||||||| || |||| || || | || |||| Sbjct 18820 AGCAACGTTTGATCTTCGCTGGGAAACAACTCGAGGACGGGCGTACCCTCTCTGACTACA 18879 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 18880 ACATTCAGAAGGAGTCTAC 18898 >seq1364 Length=53523 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || ||||||||||| ||||||||||| || || Sbjct 5621 ATGCAGATCTTTGTCAAAACGTTGACTGGGAAAACGATCACCCTCGAAGTTGAATCATCG 5562 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | || | || || || || ||||| | || ||||| || Sbjct 5561 GATACTATAGACAATGTGAAGGC-GAAGATCCAGGATAAGGAAGGAATTCCCCCAGACCA 5503 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || || || || || |||||||| || | |||||| || || || || Sbjct 5502 GCAACGCCTCATCTTCGCTGGAAAGCAACTGGAGGATGGTCGCACTCTATCTGACTATAA 5443 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || || ||||||||| | ||| | | |||| || ||| Sbjct 5442 CATTCAGAAGGAATCTACATTACATCTCGTTCTCCGCCTGCGTGGTGGA 5394 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || || || || ||||| ||||| || || ||||| || | Sbjct 5394 AATGCAGATTTTCGTGAAGACTCTAACCGGGAAAACCATCACCCTTGAGGTTGAGTCTTC 5335 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || | | || ||||| || ||||| || | || || ||||| Sbjct 5334 CGATACCATCGACAACGTGAAGGCGAAAATCCAAGATAAAGAGGGGATTCCTCCTGATCA 5275 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | ||||| || || || || |||| || | ||| ||| | || ||||| Sbjct 5274 ACAGCGCCTGATATTCGCGGGGAAGCAGTTGGAGGATGGACGTACTCTTTCTGACTACAA 5215 Query 23790 CATACAAAAAGAG 23802 ||| ||||| ||| Sbjct 5214 CATTCAAAAGGAG 5202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337961628515660