Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leucosporidium_20creatinivorum_20[genbank_20GCA_5F001600635.1_202016 -03-01] 122 sequences; 27,969,159 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq21 114 2e-20 seq11 98.7 2e-15 >seq21 Length=517387 Score = 114 bits (126), Expect = 2e-20 Identities = 129/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||||||||| || ||| ||| ||| ||||| | |||||| || | || | | || Sbjct 15098 CATGCCGGTCTTGAGTCCCCTCTTCCATCCGTAGAAGTGCATCGAGGTGAGCTGGGCCAT 15157 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 | ||||| | || ||||||||| || |||||||| |||||||| |||||| || || | Sbjct 15158 GGTGGGGCTCGACAAGTGAATGTTGAGCGACTGGCTCTGGTCGAT-AAAGGCTCCACGGT 15216 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | || | | | ||| ||||||||||| || |||||||| || |||||| Sbjct 15217 CGGCCGAGAGGTCGATGATGGTCTTCTGGGAGATCTCCCAGACGGTCTTG 15266 Score = 104 bits (114), Expect = 4e-17 Identities = 352/539 (65%), Gaps = 22/539 (4%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 |||||| || |||||| ||||| ||| || | || ||||| | ||| | || | || Sbjct 16630 CTCCATGAAGAGGTCGGGAATCCAGAGGGCGAAGAAGAGATCCCTGGCGCGAACCTCCTC 16689 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| | ||| || || || | |||||||||||||| || || | Sbjct 16690 CTTGCCGTGGTTCTTGCGAAGGTCGAGG-AACTCGAAGATGTCGGCGTGCCATGGTTCGA 16748 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | || || || | |||||| || |||||||| || ||||| | | Sbjct 16749 GGTAGATGGCGAAGGCTCCGGGGCGCTTGTTTCCTCCCTGGTCAACGTAGCGAGCCGTGT 16808 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 |||| | || || ||||| || | | ||||| | | ||||| || | | |||| Sbjct 16809 TGTTGTAGACACGGAGCATAGGGATGATGCCGTTCGAGTAGCCGTTGGTTCCGGCGATGT 16868 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCG-CCAATCCCGCCAGAACACTTGGCG 205462 |||||| || | | |||| ||| || | | || || || || | ||||| | Sbjct 16869 ACGAGCCAGTCGCGCGGATGTTGTGGAT-GCTGAGTCCGATTCCTCCGGCCGTCTTGGAG 16927 Query 205463 ATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGT 205521 || ||||||| ||||| || ||| |||||| || |||| || |||||| || || Sbjct 16928 ATGAGGGCGCAGGTCTTG-AGCGTGTCGTAGATACCCTCGATCGAGTCGTCCTTCATGGT 16986 Query 205522 CACCAGATAGCACGAAGCCAGCTTGGCAAAGTTG----GTGCCCGCGTGGAAGAGCGTGG 205577 || || |||| || | |||| || | || || || |||| |||||| || | Sbjct 16987 GACGAGGAAGCAGGAGGAGAGCTGGG----GGTGAGGAGTTCCGGCGTTGAAGAGGGTCG 17042 Query 205578 GGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACA----CCTGTAGGTCTCCAGCACGCTC 205633 | ||||||| ||||| | ||||| ||| |||| | || || |||| | Sbjct 17043 GCGAGGCGTGGGTGAAG----TAGCGCTCCGACATGAGGTTGTACGACTGGAGAACGCGC 17098 Query 205634 TCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692 || | || ||||||| ||||| | |||| | ||||| | ||| ||||||| ||| Sbjct 17099 TCAATGTCCGAGCCGTGGATACCGACAGCGACACGCATGAGCATGTGCTGAGGTCGCTC 17157 >seq11 Length=836129 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 159793 GTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGAC 159852 ||| ||||| | || || || || ||||| || || ||||||||||||||||| || Sbjct 272190 GTTCATCCCAATCAAACTGACCGGCAGCGCCTCGCTCAAGAACTCCTTCTCAATCTCTAC 272131 Query 159853 CGCTTCGGTCACAATCTGCGAGACA--CG-TTCGTACCCCGGCTTGCCCAAAATGTGGTC 159909 ||||| |||| || |||||| || ||| | | | | |||| ||| Sbjct 272130 TGCTTCCCTCACGATGGCAGAGACAGTCGCTTCTGATGGTCGATGGTTCAAA---TGGG- 272075 Query 159910 CTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTT 159969 | || |||||||| || || ||| |||||| || |||||||| ||||||| ||||| Sbjct 272074 --TGAAGAGGAGGCAAGCGAAATCGGTGTGCAGCCCTTCGTCCCGTGAGATGAGTTCGTT 272017 Query 159970 GGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGG 160019 ||| | | ||| || ||||||| || ||| |||||||||||| |||| Sbjct 272016 GGAGAAGCAGAGACCGGGCATGAGGCCTCGCTTTTTGAGCCAAAAGATGG 271967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153987388320