Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq522 118 1e-21 seq523 114 1e-20 >seq522 Length=1154 Score = 118 bits (130), Expect = 1e-21 Identities = 273/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| || ||||| || || || | |||||||| ||| || ||| Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | ||||||||| || || ||||| || |||||||||| || ||| Sbjct 779 TTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAC 720 Query 17105 GCGATTAATCGTTCGGCGTACG---TCGCGTCTTTGTTACGAATCCATTTCTGCACCCAC 17161 || | | || ||| || ||| || || | ||| ||||| | || ||||| Sbjct 719 GCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTTG---ATCCACGTGAGCGCCCAC 663 Query 17162 TCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCC 17221 || || || |||| | ||| || || || || || | || | ||| | | Sbjct 662 TCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGC 603 Query 17222 TGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCC 17281 | || | || || || |||||||| || ||| | || ||||| ||||||||| Sbjct 602 GCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCC 543 Query 17282 ATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAAT 17341 || ||||| || ||||| ||||| || ||||| || || || || || | |||| Sbjct 542 ATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGATCTGCACCTCGCCCGAGAAG 483 Query 17342 CGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 ||||| || || ||||| ||||||||||| || ||||| || || Sbjct 482 CGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGC 433 >seq523 Length=1154 Score = 114 bits (126), Expect = 1e-20 Identities = 272/410 (66%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| || ||||| || || || | |||||||| ||| || ||| Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | |||||||| || || ||||| || |||||||||| || ||| Sbjct 779 TTGAGCCAGAAGATGGACGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAC 720 Query 17105 GCGATTAATCGTTCGGCGTACG---TCGCGTCTTTGTTACGAATCCATTTCTGCACCCAC 17161 || | | || ||| || ||| || || | ||| ||||| | || ||||| Sbjct 719 GCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTTG---ATCCACGTGAGCGCCCAC 663 Query 17162 TCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCC 17221 || || || |||| | ||| || || || || || | || | ||| | | Sbjct 662 TCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGC 603 Query 17222 TGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCC 17281 | || | || || || |||||||| || ||| | || ||||| ||||||||| Sbjct 602 GCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCC 543 Query 17282 ATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAAT 17341 || ||||| || ||||| ||||| || ||||| || || || || || | |||| Sbjct 542 ATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGATCTGCACCTCACCCGAGAAG 483 Query 17342 CGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 ||||| || || ||||| ||||||||||| || ||||| || || Sbjct 482 CGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGC 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517488094214520