Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq522 118 1e-21
seq523 114 1e-20
>seq522
Length=1154
Score = 118 bits (130), Expect = 1e-21
Identities = 273/410 (67%), Gaps = 6/410 (1%)
Strand=Plus/Minus
Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044
|||||||| | ||| || ||||| || || || | |||||||| ||| || |||
Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780
Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104
|| | ||| || || | ||||||||| || || ||||| || |||||||||| || |||
Sbjct 779 TTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAC 720
Query 17105 GCGATTAATCGTTCGGCGTACG---TCGCGTCTTTGTTACGAATCCATTTCTGCACCCAC 17161
|| | | || ||| || ||| || || | ||| ||||| | || |||||
Sbjct 719 GCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTTG---ATCCACGTGAGCGCCCAC 663
Query 17162 TCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCC 17221
|| || || |||| | ||| || || || || || | || | ||| | |
Sbjct 662 TCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGC 603
Query 17222 TGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCC 17281
| || | || || || |||||||| || ||| | || ||||| |||||||||
Sbjct 602 GCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCC 543
Query 17282 ATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAAT 17341
|| ||||| || ||||| ||||| || ||||| || || || || || | ||||
Sbjct 542 ATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGATCTGCACCTCGCCCGAGAAG 483
Query 17342 CGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391
||||| || || ||||| ||||||||||| || ||||| || ||
Sbjct 482 CGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGC 433
>seq523
Length=1154
Score = 114 bits (126), Expect = 1e-20
Identities = 272/410 (66%), Gaps = 6/410 (1%)
Strand=Plus/Minus
Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044
|||||||| | ||| || ||||| || || || | |||||||| ||| || |||
Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780
Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104
|| | ||| || || | |||||||| || || ||||| || |||||||||| || |||
Sbjct 779 TTGAGCCAGAAGATGGACGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAC 720
Query 17105 GCGATTAATCGTTCGGCGTACG---TCGCGTCTTTGTTACGAATCCATTTCTGCACCCAC 17161
|| | | || ||| || ||| || || | ||| ||||| | || |||||
Sbjct 719 GCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTTG---ATCCACGTGAGCGCCCAC 663
Query 17162 TCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCC 17221
|| || || |||| | ||| || || || || || | || | ||| | |
Sbjct 662 TCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGC 603
Query 17222 TGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCC 17281
| || | || || || |||||||| || ||| | || ||||| |||||||||
Sbjct 602 GCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCC 543
Query 17282 ATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAAT 17341
|| ||||| || ||||| ||||| || ||||| || || || || || | ||||
Sbjct 542 ATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGATCTGCACCTCACCCGAGAAG 483
Query 17342 CGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391
||||| || || ||||| ||||||||||| || ||||| || ||
Sbjct 482 CGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGC 433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517488094214520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |