Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq231 134 2e-26
seq1375 132 6e-26
seq230 132 6e-26
seq464 82.4 9e-11
>seq231
Length=27061
Score = 134 bits (148), Expect = 2e-26
Identities = 147/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || |||||||| || | ||||| || |||| || |||||||| || || ||
Sbjct 325 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAA 266
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||||| ||| | || |||||||||| ||| || |||| |||
Sbjct 265 GATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 207
Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| ||| || || |||| |||||||| ||||| || |||||||| |
Sbjct 206 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCA 147
Query 43171 CAAAGATTTGCAT 43183
| |||||||||||
Sbjct 146 CGAAGATTTGCAT 134
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||| | || || || | || || |||||||| || |||||
Sbjct 891 CTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 832
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | ||| | || |||||||||| ||| || |||| |
Sbjct 831 GATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 772
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| || || || || | |||||| || |||||||| | ||||| ||
Sbjct 771 GTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGAC 712
Query 43172 AAAGATTTGCAT 43183
||||| |||||
Sbjct 711 GAAGATCTGCAT 700
>seq1375
Length=30983
Score = 132 bits (146), Expect = 6e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040
|||| ||| |||||| ||||| ||||| || | ||||| || |||| || ||||||
Sbjct 15729 TGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGC 15788
Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100
|| || ||||| ||||| ||||||||||||| || | || |||||| ||| ||| ||
Sbjct 15789 TTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTC 15848
Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160
|||| | | | ||||||||||| || || || | |||||| || ||||||||
Sbjct 15849 GCCTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCGTG 15908
Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| || ||||| |||||
Sbjct 15909 AGGGTCTTGACGAAGATCTGCAT 15931
Score = 102 bits (112), Expect = 9e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| |||||||| | ||||| || | || || |||||||| || |||||
Sbjct 15512 CTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAA 15571
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | ||||||||||| | ||| | | ||| |||||| ||| || || | |||
Sbjct 15572 GATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTTCGCCTTCA-CGT 15630
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| || || || || | ||||||||| ||||| || |||||||| |
Sbjct 15631 TGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGA 15690
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 15691 CGAAGATCTGCAT 15703
>seq230
Length=49901
Score = 132 bits (146), Expect = 6e-26
Identities = 149/194 (77%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| || || ||
Sbjct 21856 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCAAA 21797
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110
|| || ||||||||||| | ||| | || |||||||||| ||| | || | |||| ||
Sbjct 21796 GATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 21739
Query 43111 TCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | | | |||||||||||| || || |||| |||||||| ||||| || ||||||||
Sbjct 21738 TTGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTC 21679
Query 43170 ACAAAGATTTGCAT 43183
|| |||||||||||
Sbjct 21678 ACGAAGATTTGCAT 21665
Score = 120 bits (132), Expect = 3e-22
Identities = 144/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| || |||||
Sbjct 22701 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 22642
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | ||| | || |||||||||| ||| || |||| |||
Sbjct 22641 GATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 22583
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || |||| |||||| || |||||||| | |||||| |
Sbjct 22582 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGA 22523
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 22522 CGAAGATCTGCAT 22510
>seq464
Length=19301
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | ||||| || |||| || |||||||| ||||||||
Sbjct 3620 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 3679
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCT 43081
||||| ||||||||||||| ||| | |||
Sbjct 3680 GATGAGGCGCTGCTGGTCGGGCGGGATGCT 3709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571754063916920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |