Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq231 134 2e-26 seq1375 132 6e-26 seq230 132 6e-26 seq464 82.4 9e-11 >seq231 Length=27061 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || | ||||| || |||| || |||||||| || || || Sbjct 325 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAA 266 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| ||| | || |||||||||| ||| || |||| ||| Sbjct 265 GATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 207 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || |||| |||||||| ||||| || |||||||| | Sbjct 206 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCA 147 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 146 CGAAGATTTGCAT 134 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | || || || | || || |||||||| || ||||| Sbjct 891 CTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 832 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | || |||||||||| ||| || |||| | Sbjct 831 GATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 772 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | |||||| || |||||||| | ||||| || Sbjct 771 GTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGAC 712 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 711 GAAGATCTGCAT 700 >seq1375 Length=30983 Score = 132 bits (146), Expect = 6e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| ||||| ||||| || | ||||| || |||| || |||||| Sbjct 15729 TGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGC 15788 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || ||||| ||||| ||||||||||||| || | || |||||| ||| ||| || Sbjct 15789 TTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTC 15848 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 |||| | | | ||||||||||| || || || | |||||| || |||||||| Sbjct 15849 GCCTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCGTG 15908 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||| ||||| Sbjct 15909 AGGGTCTTGACGAAGATCTGCAT 15931 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| | ||||| || | || || |||||||| || ||||| Sbjct 15512 CTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAA 15571 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | ||| | | ||| |||||| ||| || || | ||| Sbjct 15572 GATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTTCGCCTTCA-CGT 15630 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || || | ||||||||| ||||| || |||||||| | Sbjct 15631 TGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGA 15690 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 15691 CGAAGATCTGCAT 15703 >seq230 Length=49901 Score = 132 bits (146), Expect = 6e-26 Identities = 149/194 (77%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || || || Sbjct 21856 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCAAA 21797 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || || ||||||||||| | ||| | || |||||||||| ||| | || | |||| || Sbjct 21796 GATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 21739 Query 43111 TCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | |||||||||||| || || |||| |||||||| ||||| || |||||||| Sbjct 21738 TTGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTC 21679 Query 43170 ACAAAGATTTGCAT 43183 || ||||||||||| Sbjct 21678 ACGAAGATTTGCAT 21665 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 22701 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 22642 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | || |||||||||| ||| || |||| ||| Sbjct 22641 GATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 22583 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||| || |||||||| | |||||| | Sbjct 22582 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGA 22523 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 22522 CGAAGATCTGCAT 22510 >seq464 Length=19301 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||||| || |||| || |||||||| |||||||| Sbjct 3620 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 3679 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCT 43081 ||||| ||||||||||||| ||| | ||| Sbjct 3680 GATGAGGCGCTGCTGGTCGGGCGGGATGCT 3709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571754063916920