Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1375 125 5e-24 seq230 125 5e-24 seq231 116 2e-21 seq464 84.2 1e-11 >seq1375 Length=30983 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||| || Sbjct 15705 CCGCCGCGGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 15764 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || ||||| ||||| |||||||||||| || Sbjct 15765 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 15824 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | || | | || | ||| |||| ||||| Sbjct 15825 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACATTGTCGATAGTGTCGCTCGACTCGACC 15884 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| ||||| || || || ||||||||||| Sbjct 15885 TCAAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 15931 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||| || || || || | || Sbjct 15492 AGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCC 15551 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 || | ||||||||| ||||| || | ||||||||||| | |||| | | ||| ||||| Sbjct 15552 TCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGCGGG-ATACCCTCTTTGTC 15610 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | | || | || | || ||||| |||| ||||||||| Sbjct 15611 CTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGT 15670 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || ||||||||||| Sbjct 15671 CTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 15703 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| |||||||||||||| Sbjct 15933 CCGCCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAG 15992 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 || |||| | || || | ||||||||| ||||| || || |||||||||||| Sbjct 15993 AGAGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCG 16046 >seq230 Length=49901 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | || || ||||| | ||| || ||||| ||||||||||| || Sbjct 22736 CCGCCGCGCAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 22677 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| || | ||||||||| ||||| ||||| ||||||||||| | |||| Sbjct 22676 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGG 22617 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | | |||| || | || ||||| Sbjct 22616 -ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 22558 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| || | || || || ||||||||||| Sbjct 22557 CTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGACGAAGATCTGCAT 22510 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || |||| |||| || | ||||||||| || || Sbjct 21855 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCAAAG 21796 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| | |||| | || ||||||||| ||||| ||| | | Sbjct 21795 ATAAGGCGCTGCTGGTCTGGCGGG-ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 21737 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| ||| |||| ||||| || | |||||||| |||||||| || || ||||| Sbjct 21736 GTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCAC 21677 Query 34378 AAAGATCTGCAT 34389 ||||| ||||| Sbjct 21676 GAAGATTTGCAT 21665 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||| || ||||| | || || ||||| ||||||||||| || Sbjct 22508 CCGCCGCGGAGGCGCAGGACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGAG 22449 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 ||| ||| |||| || | ||||||||| ||||| ||||| |||||||||||| Sbjct 22448 AGCGTACGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCG 22395 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| ||||||||||| || || ||| |||| Sbjct 22211 AGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 22152 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 || | ||||||||| ||||| ||||| |||||||||||| Sbjct 22151 TCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCG 22113 >seq231 Length=27061 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || ||||| | ||| || ||||| |||||||| || || Sbjct 926 CCACCGCGCAGACGAAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGAA 867 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | |||||| || ||||| ||||| ||||||||||| | |||| Sbjct 866 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGG 807 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | |||| || | || ||||| Sbjct 806 -ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCCGAGGACTCGAC 748 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || ||||| || | || || || ||||||||||| Sbjct 747 CTCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 700 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || |||||||| || || ||| |||| || | ||||||||| || || Sbjct 324 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAG 265 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||||||| || | || ||||||||| ||||| ||| | | | Sbjct 264 ATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTG 205 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||| ||||| || | |||||||| |||||||| || || ||||| Sbjct 204 TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCACG 145 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 144 AAGATTTGCAT 134 Score = 102 bits (112), Expect = 5e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||| || ||||||| || || ||||| ||||||||||| || Sbjct 698 CCGCCGCGCAGGCGCAGGACGAGGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 639 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 ||| ||| |||| || | ||||||||| ||||||||||| |||||||||||| Sbjct 638 AGCGTACGCCCGTCCTCGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCG 585 >seq464 Length=19301 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| || ||||| |||||||||||||| || ||| |||| Sbjct 3600 AGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 3659 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 || | ||||||||| ||||| ||||| |||||||||||| Sbjct 3660 TCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCG 3698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323037000095840