Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4264 165 2e-35 seq1779 84.2 5e-11 >seq4264 Length=4713 Score = 165 bits (182), Expect = 2e-35 Identities = 382/575 (66%), Gaps = 3/575 (1%) Strand=Plus/Minus Query 248816 AGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCA 248875 ||||| | ||||| | |||||| || || ||| || || |||||||| || | || Sbjct 3428 AGTACAACTTCTTCGGTTTCAAGACCCTCGAGCGGTCATACCTCCTCAAGATCAACAACA 3369 Query 248876 AGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATG 248935 || | || || ||| || ||| || | ||||| || || ||||| || ||| || | Sbjct 3368 AGGTTGTTGAGCGACCGCAACACCTGCTCATGCGGGTCGCCGTCGGCATCCACGGCGAGG 3309 Query 248936 ACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCA 248995 |||| ||| | | | | |||||||| | ||| | ||| | || || ||| Sbjct 3308 ACATTGAGCGTGCGATTGAGACGTATCACTACATGTCGAACCGCCACTTCACGCACGCCT 3249 Query 248996 CACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 | |||||||||||||||||||| || || |||| ||||| || ||||| || | Sbjct 3248 CGCCGACGCTCTTCAACGCCGGCACAGTGCACAACCAGCTCGCGTCCTGCTTCCTGGTCT 3189 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTT 249115 ||| | |||||||| |||| ||||| || || ||||| || | |||| ||| | Sbjct 3188 GTATGAAGGACGACTCGATCGAGGGCATCTACGAGACGCTCAAGAACTGTGCGATGATCT 3129 Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175 | || |||||||| ||||| ||| | || |||||| || |||| || ||||||| Sbjct 3128 CGAAGACGGCGGGCGGCATCGGCCTCAACATCCACAACATTCGTGCGACCGGGTCGTACA 3069 Query 249176 TCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCA 249235 | ||||| || || | | |||||||| ||| | ||||| ||| || | | Sbjct 3068 TTGCCGGTACGAACGGCATGTCGAACGGTATCGTGCCCATGCTTCGCGCCTTCGACGCGA 3009 Query 249236 CCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGG 249292 | ||| | | | | |||||| ||| | ||| || | |||||||| || | | Sbjct 3008 CGGCCCGCTACGTTGACCAGGGCGGCAACAAACGACCCGGTGCCTTCGCCATCTACCTTG 2949 Query 249293 AAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGC 249352 | |||||||||||| | || || ||||| ||| | |||||| ||||||| || Sbjct 2948 AGCCGTGGCACGCCGACGTTTTTGACTTCCTTGACCTCCGTAAGAACCACGGCAAGGAAG 2889 Query 249353 TCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGG 249387 | || || ||||||||||| | |||||| Sbjct 2888 AATCCCGTGCCCGCGACCTCTTCTATGCGCTGTGG 2854 >seq1779 Length=5957 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| |||||| ||||| | ||||| || ||||||||||| |||||||| Sbjct 145 ACGCCAGCCTTGGAGTACTCAGCCACCCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGT 86 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTA 157344 || ||||||||||| | ||||| ||||| | | |||||| Sbjct 85 GAGATCATGTCCATGAAGTCGAACGGGTTTGTGACGTTGTA 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073644108409152