Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_002794.1 Length=195859 Score E Sequences producing significant alignments: (Bits) Value seq8065 86.0 8e-12 seq2749 86.0 8e-12 seq1750 82.4 1e-10 >seq8065 Length=1008 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 94326 CAGCCACGTCGAGTAACACAGGTTGTGCGCCATGATGATGGACGGGTACAGACTGGCGAA 94385 |||| |||||| |||||| |||||||||||||| ||||| ||||| ||||| || || Sbjct 982 CAGCAACGTCGTGTAACAGAGGTTGTGCGCCATCATGATCGACGGATACAGTGATGCAAA 923 Query 94386 GTCGAACACGGCCACGGGCGCGTGGTGATAGCCCACCGTGGGCTCGAACACGGTGGCGCC 94445 ||||| ||| | ||| ||| || ||||| | ||||||||| || || || || Sbjct 922 GTCGAGGGTGGCGATGGGAACGTCGTAGTAGCCTTTCTTGGGCTCGATGACCGTTGCTCC 863 Query 94446 CTGGTAC 94452 || |||| Sbjct 862 CTCGTAC 856 >seq2749 Length=1008 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 94326 CAGCCACGTCGAGTAACACAGGTTGTGCGCCATGATGATGGACGGGTACAGACTGGCGAA 94385 |||| |||||| |||||| |||||||||||||| ||||| ||||| ||||| || || Sbjct 27 CAGCAACGTCGTGTAACAGAGGTTGTGCGCCATCATGATCGACGGATACAGTGATGCAAA 86 Query 94386 GTCGAACACGGCCACGGGCGCGTGGTGATAGCCCACCGTGGGCTCGAACACGGTGGCGCC 94445 ||||| ||| | ||| ||| || ||||| | ||||||||| || || || || Sbjct 87 GTCGAGGGTGGCGATGGGAACGTCGTAGTAGCCTTTCTTGGGCTCGATGACCGTTGCTCC 146 Query 94446 CTGGTAC 94452 || |||| Sbjct 147 CTCGTAC 153 >seq1750 Length=14679 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 94326 CAGCCACGTCGAGTAACACAGGTTGTGCGCCATGATGATGGACGGGTACAGACTGGCGAA 94385 |||| |||||| |||||| |||||||||||||| ||||| ||||| ||||| || || Sbjct 14555 CAGCAACGTCGTGTAACAGAGGTTGTGCGCCATCATGATCGACGGATACAGTGATGCAAA 14614 Query 94386 GTCGAACACGGCCACGGGCGCGTGGTGATAGCCCACCGTGGGCTCGAACACGGTGGCGCC 94445 ||||| ||| | ||| ||| || ||||| | ||||||||| || || || || Sbjct 14615 GTCGAGGGTGGCGATGGGAACGTCGTAGTAGCCTTTCTTGGGCTCGATGACCGTTGCTCC 14674 Query 94446 CTGGT 94450 || || Sbjct 14675 CTCGT 14679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626551174596360