Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1375 113 4e-20 seq230 96.9 3e-15 >seq1375 Length=30983 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||||||||||||||| || ||| |||| || || || Sbjct 15728 GTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTG 15787 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| || | ||||| ||||||||||| | |||||||| ||| || || Sbjct 15788 CTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTT 15847 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| | ||| ||||| | || |||||||||||||| Sbjct 15848 CGCCTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCGT 15907 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || ||||| |||||| Sbjct 15908 GAGGGTCTTGACGAAGATCTGCATG 15932 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| || || |||| | || || || || || || ||||| Sbjct 15512 CTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAA 15571 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| ||||| || || | |||||| |||||| || || ||| || Sbjct 15572 GATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTTCGCCTTCACGTT 15631 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||| || |||| || || |||||||| || || ||||| || Sbjct 15632 GTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGAC 15691 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 15692 GAAGATCTGCAT 15703 >seq230 Length=49901 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| ||||||||||| || || |||| || || || Sbjct 21868 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTG 21809 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | ||||| ||||| || || | |||||||||||| ||| || Sbjct 21808 CTTGCCCGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTT 21749 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| | ||| ||||| | ||| || |||||||| || Sbjct 21748 GGCCTTGACGTTGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 21689 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||||||| |||||||||||| || Sbjct 21688 CAGCGTCTTCACGAAGATTTGCATGGTG 21661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395032399651669