Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4264 235 5e-57 seq523 187 2e-42 seq522 183 3e-41 seq231 116 3e-21 seq1375 100 3e-16 seq230 100 3e-16 >seq4264 Length=4713 Score = 235 bits (260), Expect = 5e-57 Identities = 429/621 (69%), Gaps = 8/621 (1%) Strand=Plus/Plus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || ||||||||||| || || ||||| || |||||||| || || || |||||| Sbjct 2840 AAGAGGTCCGGTATCCACAGCGCATAGAAGAGGTCGCGGGCACGGGATTCTTCCTTGCCG 2899 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| | || | ||||| || ||||| || ||||||||||| ||||| | | Sbjct 2900 TGGTTCTTACGGAGGTCAAGGAAGTCAAAAACGTCGGCGTGCCACGGCTCAAGGTAGATG 2959 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || |||| || ||||||||||| || ||||| |||||||| || | | Sbjct 2960 GCGAAGGCACCGGGTCGTTTGTTGCCGCCCTGGTCAACGTAGCGGGCCGTCGCGTCGAAG 3019 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAAC 23594 | | ||||| ||||||| |||||| ||| |||| | || || || | ||| | Sbjct 3020 GCGCGAAGCATGGGCACGATACCGTTCGACATGCCGTTCGTA--CCGGCAATGTACGACC 3077 Query 23595 CTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 | | || |||| |||||| | || || || ||||| || ||| ||||| ||||||| Sbjct 3078 CGGTCGCACGAATGTTGTGGATGTTGAGGCCGATGCCGCCCGCCGTCTTCGAGATCATCG 3137 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGA 23714 | || | || || || ||||||||||||||||| ||| || || | ||||| || Sbjct 3138 CACAGTTCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATACAGACCAGGA 3197 Query 23715 AACACGAAGACATTTGCGCTTTGGGC-GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 | || || | | || | | || | || |||| ||| || ||||| ||||||| Sbjct 3198 AGCAGGACGCGAGCTG-GTTGTGCACTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGC 3256 Query 23774 GTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 || |||| | |||||||| ||| | ||||| || || || ||||||||||| || Sbjct 3257 GTGAAGTGGCGGTTCGACATGTAG-TGATACGTCTCAATCGCACGCTCAATGTCCTCGCC 3315 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTT 23892 ||| || |||| |||||| ||||| | || || ||| |||| ||| || | ||| Sbjct 3316 GTGGATGCCGACGGCGACCCGCATGAGCAGGTGTTGCGGTCGCTCAACAACCTTGTTGTT 3375 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 || |||| || ||||| || | | || || || || || ||| || | ||||| Sbjct 3376 GATCTTGAGGAGGTATGACCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTACTGGAAGTC 3435 Query 23953 ACGATCGTGCACTATGGCCGA 23973 || |||| | ||||| || Sbjct 3436 CCGGTCGTAGATGATGGCAGA 3456 Score = 150 bits (166), Expect = 2e-31 Identities = 278/404 (69%), Gaps = 13/404 (3%) Strand=Plus/Plus Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605 |||||| || |||||||| ||||||| || |||||||| | || |||||||| | || Sbjct 1935 GGTCGACGCCGTCGGCATTGGCGCCATAAGAAGCGAGTTCCGCATGCCGTGCTCGGCGAT 1994 Query 22606 TTTACTCTTGAGCATCGACC-AGTCCCACAGATCGGACGGCGTCACATTGTCCCACATAT 22664 || |||||| | || || ||||||| | | | |||| | || || ||||| | Sbjct 1995 CTTCGCCTTGAG-ACCGTCCCAGTCCCAGCGCTGGCTCGGCTTGACGTT---CCACAGGT 2050 Query 22665 CGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATA 22724 || | |||| | ||| | ||| |||||||| || |||| ||||||||||| | Sbjct 2051 CGAACTGCAGCTTGCCAAGCTGCGCTGGGCTGCCCTCCCACGTCTCGTACGGACCCTCGG 2110 Query 22725 TCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784 || ||| || || ||||| ||||| ||||| ||| ||| || ||||||||||| | || Sbjct 2111 TCATGGCGAGCTCACAGCTAGCCTCGCACGCGGCGTGATACATCGTCTCGAAGATGTCCT 2170 Query 22785 TGTTCA----ATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCG 22840 |||| | |||| | || ||| ||| | || | |||| | || ||| ||| Sbjct 2171 TGTTGAGCTGCTTCGCCTCGGGTGAC----TCGAAGGGGAAGCGCAGCGCCATGAATGCG 2226 Query 22841 TCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCC 22900 || || | |||||| ||| || |||||||| |||| || ||||| || ||| Sbjct 2227 TCGGCGAGACCCTGGCAGCCGATGCCGATCGGGCGGTGGCGCATGTTCGAGCGCTTGGCC 2286 Query 22901 TCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 || || | |||||| | ||| ||||| | | ||||||||| Sbjct 2287 TCCGGGATAGGATAGTAGTTCTTGTCGATGATCCGGTTCAAGTT 2330 >seq523 Length=1154 Score = 187 bits (206), Expect = 2e-42 Identities = 385/566 (68%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || ||||| ||||| | ||| || | |||||| Sbjct 304 ATATGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACCTG 363 Query 57630 TCTAAGGATCTGAGCGATTGGG---ATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| | ||| ||| | ||| || || ||| | | || || Sbjct 364 TCCAAGGACATCCACGACTGGAGCAACCGCCTGAACGACAACGAGCGTCACTTCATCTCG 423 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| || || || || || || |||||||| || ||||| | Sbjct 424 CACGTCCTCGCCTTCTTCGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAACGC 483 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || ||||| | | || ||| | ||||| ||||| || || | || Sbjct 484 TTCTCGGGTGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATG 543 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || | || ||||| |||||||| || ||| | ||||| || | Sbjct 544 GAGAACATCCACTCTGAGACCTACTCGCTCCTCATCGACACATACATTAAGGAGC-CGGC 602 Query 57867 GAGAAACGTAGA--CTGTTCAACGCGATCGAAACAATGCCC-GCG---ATCGCCAAGAAG 57920 | || || || ||| | |||||||| || || ||| ||| | ||| ||| Sbjct 603 GCAGCGCG-AGTTCCTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGC----AAG 657 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 || |||||| | ||| ||||| || || | | |||||| |||| | || | Sbjct 658 GCTGAGTGGGCGCTCACGTGGATCAACGACGAGCAGAGCTCGTTCGGCGAGCGCCTCGTT 717 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 ||||||||||||||||| || || ||||| |||||| || ||| | || || ||| | Sbjct 718 GCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCGTCCATCTTCTGGCTC 777 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| ||||| || ||||||||||| || || ||||||| | || |||||||||||| Sbjct 778 AAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 837 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 || | || || || ||||| ||||| Sbjct 838 GGCATGCACACGGACTTTGCCTGCCT 863 >seq522 Length=1154 Score = 183 bits (202), Expect = 3e-41 Identities = 384/566 (68%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || ||||| ||||| | ||| || | |||||| Sbjct 304 ATATGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACCTG 363 Query 57630 TCTAAGGATCTGAGCGATTGGG---ATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| | ||| ||| | ||| || || ||| | | || || Sbjct 364 TCCAAGGACATCCACGACTGGAGCAACCGCCTGAACGACAACGAGCGTCACTTCATCTCG 423 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| || || || || || || |||||||| || ||||| | Sbjct 424 CACGTCCTTGCCTTCTTCGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAACGC 483 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || ||||| | | || ||| | ||||| ||||| || || | || Sbjct 484 TTCTCGGGCGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATG 543 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || | || ||||| |||||||| || ||| | ||||| || | Sbjct 544 GAGAACATCCACTCTGAGACCTACTCGCTCCTCATCGACACATACATTAAGGAGC-CGGC 602 Query 57867 GAGAAACGTAGA--CTGTTCAACGCGATCGAAACAATGCCC-GCG---ATCGCCAAGAAG 57920 | || || || ||| | |||||||| || || ||| ||| | ||| ||| Sbjct 603 GCAGCGCG-AGTTCCTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGC----AAG 657 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 || |||||| | ||| ||||| || || | | |||||| |||| | || | Sbjct 658 GCTGAGTGGGCGCTCACGTGGATCAACGACGAGCAGAGCTCGTTCGGCGAGCGCCTCGTT 717 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 ||||||||||||||||| || || ||||| |||||| || || | || || ||| | Sbjct 718 GCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCCTCCATCTTCTGGCTC 777 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| ||||| || ||||||||||| || || ||||||| | || |||||||||||| Sbjct 778 AAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 837 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 || | || || || ||||| ||||| Sbjct 838 GGCATGCACACGGACTTTGCCTGCCT 863 >seq231 Length=27061 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| ||||| || |||||| |||| || || |||| Sbjct 133 CATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTC 192 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| || || ||||||||| ||| | ||||||||||| Sbjct 193 CGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 252 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| || || || || ||||| ||| | || ||| Sbjct 253 GCAGCGCCTTATCTTTGCGGGCAAGCAGCTCGAGGAC 289 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| |||||||| | || || || | || Sbjct 699 CATGCAGATCTTCGTCAAGACATTGACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTC 758 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || ||||||||| ||| | ||||| ||||| Sbjct 759 GGACACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 818 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| || || ||| | || || || | ||||| || Sbjct 819 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTTTCGGATTACAA 878 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || |||||||| || || || ||| | ||| | || || Sbjct 879 CATCCAGAAGGAGTCGACTCTGCACCTTGTCCTTCGTCTGCGCGGTGG 926 >seq1375 Length=30983 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| |||||||| | || || || || Sbjct 15932 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTTGAGGTCGAGTCGAG 15873 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | ||||| || || ||| ||||| ||| | || |||||||| Sbjct 15872 CGACACTATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCA 15813 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| || || ||| | || ||| ||| | || || || Sbjct 15812 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAA 15753 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || || || || || || || || || | || | ||||||| Sbjct 15752 CATTCAGAAGGAGTCCACCCTGCACCTCGTCCTCCGTCTCCGCGGCGGTA 15703 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || ||||| | || || || | || Sbjct 15703 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGTTGGAAGTCGAGTCCTCG 15644 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || |||||| || || | ||||| |||||| Sbjct 15643 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAAGAGGGTATCCCGCCAGACCAG 15584 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||| ||||| ||| | || || | ||| | ||||| ||| Sbjct 15583 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCGGATTACAAC 15524 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || |||||||| || || || || Sbjct 15523 ATTCAGAAGGAGTCGACTCTCCACCTCGTCCT 15492 >seq230 Length=49901 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| |||||||| |||| || || | || Sbjct 22509 CATGCAGATCTTCGTCAAGACGTTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTC 22568 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | ||||| ||||| Sbjct 22569 GGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 22628 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||| ||| | || ||| || | || || || Sbjct 22629 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 22688 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || |||||||| || || || || | ||| | ||||| Sbjct 22689 CATCCAGAAGGAGTCGACTCTGCACCTTGTCCTCCGTCTGCGCGGCGG 22736 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| ||||| || |||||| |||| || || || Sbjct 21664 CATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 21723 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||| ||| | ||||| ||||| Sbjct 21724 CGACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCA 21783 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| || || || || ||||| ||| | || ||| Sbjct 21784 GCAGCGCCTTATCTTTGCGGGCAAGCAGCTCGAGGAC 21820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445716869780880