Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq4264 235 5e-57
seq523 187 2e-42
seq522 183 3e-41
seq231 116 3e-21
seq1375 100 3e-16
seq230 100 3e-16
>seq4264
Length=4713
Score = 235 bits (260), Expect = 5e-57
Identities = 429/621 (69%), Gaps = 8/621 (1%)
Strand=Plus/Plus
Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416
|| || ||||||||||| || || ||||| || |||||||| || || || ||||||
Sbjct 2840 AAGAGGTCCGGTATCCACAGCGCATAGAAGAGGTCGCGGGCACGGGATTCTTCCTTGCCG 2899
Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476
|||||| | || | ||||| || ||||| || ||||||||||| ||||| | |
Sbjct 2900 TGGTTCTTACGGAGGTCAAGGAAGTCAAAAACGTCGGCGTGCCACGGCTCAAGGTAGATG 2959
Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536
|| || || || |||| || ||||||||||| || ||||| |||||||| || | |
Sbjct 2960 GCGAAGGCACCGGGTCGTTTGTTGCCGCCCTGGTCAACGTAGCGGGCCGTCGCGTCGAAG 3019
Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAAC 23594
| | ||||| ||||||| |||||| ||| |||| | || || || | ||| |
Sbjct 3020 GCGCGAAGCATGGGCACGATACCGTTCGACATGCCGTTCGTA--CCGGCAATGTACGACC 3077
Query 23595 CTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654
| | || |||| |||||| | || || || ||||| || ||| ||||| |||||||
Sbjct 3078 CGGTCGCACGAATGTTGTGGATGTTGAGGCCGATGCCGCCCGCCGTCTTCGAGATCATCG 3137
Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGA 23714
| || | || || || ||||||||||||||||| ||| || || | ||||| ||
Sbjct 3138 CACAGTTCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATACAGACCAGGA 3197
Query 23715 AACACGAAGACATTTGCGCTTTGGGC-GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773
| || || | | || | | || | || |||| ||| || ||||| |||||||
Sbjct 3198 AGCAGGACGCGAGCTG-GTTGTGCACTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGC 3256
Query 23774 GTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832
|| |||| | |||||||| ||| | ||||| || || || ||||||||||| ||
Sbjct 3257 GTGAAGTGGCGGTTCGACATGTAG-TGATACGTCTCAATCGCACGCTCAATGTCCTCGCC 3315
Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTT 23892
||| || |||| |||||| ||||| | || || ||| |||| ||| || | |||
Sbjct 3316 GTGGATGCCGACGGCGACCCGCATGAGCAGGTGTTGCGGTCGCTCAACAACCTTGTTGTT 3375
Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952
|| |||| || ||||| || | | || || || || || ||| || | |||||
Sbjct 3376 GATCTTGAGGAGGTATGACCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTACTGGAAGTC 3435
Query 23953 ACGATCGTGCACTATGGCCGA 23973
|| |||| | ||||| ||
Sbjct 3436 CCGGTCGTAGATGATGGCAGA 3456
Score = 150 bits (166), Expect = 2e-31
Identities = 278/404 (69%), Gaps = 13/404 (3%)
Strand=Plus/Plus
Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605
|||||| || |||||||| ||||||| || |||||||| | || |||||||| | ||
Sbjct 1935 GGTCGACGCCGTCGGCATTGGCGCCATAAGAAGCGAGTTCCGCATGCCGTGCTCGGCGAT 1994
Query 22606 TTTACTCTTGAGCATCGACC-AGTCCCACAGATCGGACGGCGTCACATTGTCCCACATAT 22664
|| |||||| | || || ||||||| | | | |||| | || || ||||| |
Sbjct 1995 CTTCGCCTTGAG-ACCGTCCCAGTCCCAGCGCTGGCTCGGCTTGACGTT---CCACAGGT 2050
Query 22665 CGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATA 22724
|| | |||| | ||| | ||| |||||||| || |||| ||||||||||| |
Sbjct 2051 CGAACTGCAGCTTGCCAAGCTGCGCTGGGCTGCCCTCCCACGTCTCGTACGGACCCTCGG 2110
Query 22725 TCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784
|| ||| || || ||||| ||||| ||||| ||| ||| || ||||||||||| | ||
Sbjct 2111 TCATGGCGAGCTCACAGCTAGCCTCGCACGCGGCGTGATACATCGTCTCGAAGATGTCCT 2170
Query 22785 TGTTCA----ATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCG 22840
|||| | |||| | || ||| ||| | || | |||| | || ||| |||
Sbjct 2171 TGTTGAGCTGCTTCGCCTCGGGTGAC----TCGAAGGGGAAGCGCAGCGCCATGAATGCG 2226
Query 22841 TCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCC 22900
|| || | |||||| ||| || |||||||| |||| || ||||| || |||
Sbjct 2227 TCGGCGAGACCCTGGCAGCCGATGCCGATCGGGCGGTGGCGCATGTTCGAGCGCTTGGCC 2286
Query 22901 TCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944
|| || | |||||| | ||| ||||| | | |||||||||
Sbjct 2287 TCCGGGATAGGATAGTAGTTCTTGTCGATGATCCGGTTCAAGTT 2330
>seq523
Length=1154
Score = 187 bits (206), Expect = 2e-42
Identities = 385/566 (68%), Gaps = 15/566 (3%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || || ||||| ||||| | ||| || | ||||||
Sbjct 304 ATATGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACCTG 363
Query 57630 TCTAAGGATCTGAGCGATTGGG---ATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| ||||| | ||| ||| | ||| || || ||| | | || ||
Sbjct 364 TCCAAGGACATCCACGACTGGAGCAACCGCCTGAACGACAACGAGCGTCACTTCATCTCG 423
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||| || || || || || || |||||||| || ||||| |
Sbjct 424 CACGTCCTCGCCTTCTTCGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAACGC 483
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || || ||||| | | || ||| | ||||| ||||| || || | ||
Sbjct 484 TTCTCGGGTGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATG 543
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866
|| ||| | || || || | || ||||| |||||||| || ||| | ||||| || |
Sbjct 544 GAGAACATCCACTCTGAGACCTACTCGCTCCTCATCGACACATACATTAAGGAGC-CGGC 602
Query 57867 GAGAAACGTAGA--CTGTTCAACGCGATCGAAACAATGCCC-GCG---ATCGCCAAGAAG 57920
| || || || ||| | |||||||| || || ||| ||| | ||| |||
Sbjct 603 GCAGCGCG-AGTTCCTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGC----AAG 657
Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980
|| |||||| | ||| ||||| || || | | |||||| |||| | || |
Sbjct 658 GCTGAGTGGGCGCTCACGTGGATCAACGACGAGCAGAGCTCGTTCGGCGAGCGCCTCGTT 717
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
||||||||||||||||| || || ||||| |||||| || ||| | || || ||| |
Sbjct 718 GCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCGTCCATCTTCTGGCTC 777
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100
||||| ||||| || ||||||||||| || || ||||||| | || ||||||||||||
Sbjct 778 AAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 837
Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126
|| | || || || ||||| |||||
Sbjct 838 GGCATGCACACGGACTTTGCCTGCCT 863
>seq522
Length=1154
Score = 183 bits (202), Expect = 3e-41
Identities = 384/566 (68%), Gaps = 15/566 (3%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || || ||||| ||||| | ||| || | ||||||
Sbjct 304 ATATGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACCTG 363
Query 57630 TCTAAGGATCTGAGCGATTGGG---ATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| ||||| | ||| ||| | ||| || || ||| | | || ||
Sbjct 364 TCCAAGGACATCCACGACTGGAGCAACCGCCTGAACGACAACGAGCGTCACTTCATCTCG 423
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||| || || || || || || |||||||| || ||||| |
Sbjct 424 CACGTCCTTGCCTTCTTCGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAACGC 483
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || || ||||| | | || ||| | ||||| ||||| || || | ||
Sbjct 484 TTCTCGGGCGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATG 543
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866
|| ||| | || || || | || ||||| |||||||| || ||| | ||||| || |
Sbjct 544 GAGAACATCCACTCTGAGACCTACTCGCTCCTCATCGACACATACATTAAGGAGC-CGGC 602
Query 57867 GAGAAACGTAGA--CTGTTCAACGCGATCGAAACAATGCCC-GCG---ATCGCCAAGAAG 57920
| || || || ||| | |||||||| || || ||| ||| | ||| |||
Sbjct 603 GCAGCGCG-AGTTCCTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGC----AAG 657
Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980
|| |||||| | ||| ||||| || || | | |||||| |||| | || |
Sbjct 658 GCTGAGTGGGCGCTCACGTGGATCAACGACGAGCAGAGCTCGTTCGGCGAGCGCCTCGTT 717
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
||||||||||||||||| || || ||||| |||||| || || | || || ||| |
Sbjct 718 GCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCCTCCATCTTCTGGCTC 777
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100
||||| ||||| || ||||||||||| || || ||||||| | || ||||||||||||
Sbjct 778 AAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 837
Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126
|| | || || || ||||| |||||
Sbjct 838 GGCATGCACACGGACTTTGCCTGCCT 863
>seq231
Length=27061
Score = 116 bits (128), Expect = 3e-21
Identities = 120/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| ||||| ||||| || |||||| |||| || || ||||
Sbjct 133 CATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTC 192
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| |||| | ||||| || || ||||||||| ||| | |||||||||||
Sbjct 193 CGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 252
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|||||| || || || || ||||| ||| | || |||
Sbjct 253 GCAGCGCCTTATCTTTGCGGGCAAGCAGCTCGAGGAC 289
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| ||||| |||||||| | || || || | ||
Sbjct 699 CATGCAGATCTTCGTCAAGACATTGACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTC 758
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || || ||||||||| ||| | ||||| |||||
Sbjct 759 GGACACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 818
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || ||||| || || ||| | || || || | ||||| ||
Sbjct 819 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTTTCGGATTACAA 878
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || |||||||| || || || ||| | ||| | || ||
Sbjct 879 CATCCAGAAGGAGTCGACTCTGCACCTTGTCCTTCGTCTGCGCGGTGG 926
>seq1375
Length=30983
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| |||||||| | || || || ||
Sbjct 15932 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTTGAGGTCGAGTCGAG 15873
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | |||| | ||||| || || ||| ||||| ||| | || ||||||||
Sbjct 15872 CGACACTATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCA 15813
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || ||||| || || ||| | || ||| ||| | || || ||
Sbjct 15812 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAA 15753
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||| || || || || || || || || || | || | |||||||
Sbjct 15752 CATTCAGAAGGAGTCCACCCTGCACCTCGTCCTCCGTCTCCGCGGCGGTA 15703
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || ||||| || ||||| | || || || | ||
Sbjct 15703 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGTTGGAAGTCGAGTCCTCG 15644
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || || || |||||| || || | ||||| ||||||
Sbjct 15643 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAAGAGGGTATCCCGCCAGACCAG 15584
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||| | || ||||| ||||| ||| | || || | ||| | ||||| |||
Sbjct 15583 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCGGATTACAAC 15524
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || |||||||| || || || ||
Sbjct 15523 ATTCAGAAGGAGTCGACTCTCCACCTCGTCCT 15492
>seq230
Length=49901
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| ||||| |||||||| |||| || || | ||
Sbjct 22509 CATGCAGATCTTCGTCAAGACGTTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTC 22568
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||| ||| | ||||| |||||
Sbjct 22569 GGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 22628
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || ||||| ||||| ||| | || ||| || | || || ||
Sbjct 22629 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 22688
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || |||||||| || || || || | ||| | |||||
Sbjct 22689 CATCCAGAAGGAGTCGACTCTGCACCTTGTCCTCCGTCTGCGCGGCGG 22736
Score = 98.7 bits (108), Expect = 9e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| ||||| ||||| || |||||| |||| || || ||
Sbjct 21664 CATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 21723
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| |||| | ||||| | || ||||||||| ||| | ||||| |||||
Sbjct 21724 CGACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCA 21783
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|||||| || || || || ||||| ||| | || |||
Sbjct 21784 GCAGCGCCTTATCTTTGCGGGCAAGCAGCTCGAGGAC 21820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445716869780880
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