Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq973 105 6e-18 >seq973 Length=1292 Score = 105 bits (116), Expect = 6e-18 Identities = 235/346 (68%), Gaps = 10/346 (3%) Strand=Plus/Plus Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGAT-CGTGGGG--CCGCCTGTTAAT-TAG 21220 |||||||||||||| ||| | || | ||||| ||| ||| || || | | | | Sbjct 357 GCGGGGTTCCACGCAGACAAGATAATCCTCCGATCCGTCGGGTTGTGCTTGATCTTCTCG 416 Query 21221 ATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCT 21280 || ||| | | ||| |||||||| || | ||| |||| ||||| || | Sbjct 417 ATGCACTCCTT----CAGTTGGTCCACGCCTTTGCCCGTATAGTCTGCGTCCGCATCGAC 472 Query 21281 GTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCG 21340 |||||| ||||| || |||| ||||||||| || || |||||||| |||||||| || || Sbjct 473 GTACTCAGCCCCGAAGTGTCGCCACTGGAAGCCATAGACCGGCCCGAGATCGCCTTCCCG 532 Query 21341 GCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTT 21400 || | | || ||| ||| | | ||||||||| || || | ||||||| || Sbjct 533 TCGATGCGAGAGGCCGCGCGAGTCGAGAAAGGCGCGCGAGCCATTGCCGTCCCAGATGCG 592 Query 21401 TACGCCGCG-GCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACT 21459 ||||| | ||| || || ||| ||||| || | ||| | ||| ||||| || | || Sbjct 593 GACGCCCTGAGCG-GAGAGCAAGGTCGAGTCTGTTGCGCCACGGATGAACCAGAGAAGCT 651 Query 21460 CCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGG 21505 | ||| || |||| || ||| || || ||||| ||||| || Sbjct 652 CGGCCAGGATGCCCTTCAGGAACGTCCGCTTCGTGGTCAACAGTGG 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427729657020720