Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq231 93.3 4e-14
seq230 87.8 2e-12
seq1375 84.2 2e-11
>seq231
Length=27061
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||| | ||| ||||| || || || || || || | |||| ||| ||||||||
Sbjct 337 GTGGAGCGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTG 278
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| || ||| |||| || || ||||| ||||| || ||||| || ||||| ||| ||
Sbjct 277 CTTGCCCGCAAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 218
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| | | || | ||||||| | ||| ||||| | ||| | |||||||||||
Sbjct 217 CGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 158
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
|| ||| || ||||| ||||||||
Sbjct 157 CAGCGTCTTCACGAAGATTTGCAT 134
>seq230
Length=49901
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||| | ||| ||||| || || ||||| || || | || | ||| ||||||||
Sbjct 21868 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTG 21809
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| || ||| |||| || || ||||| || || || ||||| || ||||| ||| | |
Sbjct 21808 CTTGCCCGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC-TGAATCT 21750
Query 139681 TTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| | || | | || | |||||| | | ||| ||||| | ||| | ||||||||||
Sbjct 21749 TGGCCTTGACGTTGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGG 21690
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
||| ||| || ||||| ||||||||
Sbjct 21689 TCAGCGTCTTCACGAAGATTTGCAT 21665
>seq1375
Length=30983
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || | ||| | || | ||| | || ||||| || |||||||| |||||
Sbjct 15474 TGGCCACCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCC 15533
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| |||| || |||||||| || || || |||||| ||| ||||| || ||
Sbjct 15534 GAAAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGC 15593
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| || || |||||||| ||| || || | | || | ||||| | || |||
Sbjct 15594 GGGATACCCTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGACTCG 15653
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| || | || | ||||||||||| | ||| || ||||| || ||||||
Sbjct 15654 ACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATA 15704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496008881088800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |