Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1375 98.7 9e-16
seq231 96.9 3e-15
seq230 87.8 2e-12
>seq1375
Length=30983
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||| | ||| || ||||| || | ||| ||||| | |||| |||||| |||||
Sbjct 15500 GTGGAGAGTCGACTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCCTCGAGCTG 15559
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
|| || | ||||| || | ||||| ||||| || ||||| |||||||| | || ||
Sbjct 15560 CTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTT 15619
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
||||| ||| | | | ||||| | | ||||| || | ||||||||| || || ||
Sbjct 15620 CGCCTTCACGTTGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTCTTGCCGGT 15679
Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || |||||||||||
Sbjct 15680 GAGCGTCTTGACGAAGATCTGCAT 15703
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||||| || || ||||| || | ||| || || | |||| | ||||| |||||
Sbjct 15728 GTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTG 15787
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
|||||| | ||||| | | ||||| || ||||| || || || || || | || ||
Sbjct 15788 CTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTT 15847
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAG 94982
|||||||| | ||| |||||| || | ||||| |||| |||||| || || || |
Sbjct 15848 CGCCTTGACATTGTCGATAGTGTC-GCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCG 15906
Query 94983 TAAGAGTTTTCACAAAGATCTGCATGC 95009
| || || || || |||||||||||||
Sbjct 15907 TGAGGGTCTTGACGAAGATCTGCATGC 15933
>seq231
Length=27061
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||||| ||| || ||||| || | ||| ||||| | ||| | |||||| |||||
Sbjct 903 GTGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTG 844
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
|||||| | ||||| | | ||||| ||||| || || || || ||||| | || ||
Sbjct 843 CTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTT 784
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
|||||||| | ||| ||||| | | ||||| || | |||||| || || || ||
Sbjct 783 CGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGT 724
Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009
| || || || |||||||||||||
Sbjct 723 CAATGTCTTGACGAAGATCTGCATGC 698
>seq230
Length=49901
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||||| ||| || ||||| || | ||| || || | ||| | ||||| |||||
Sbjct 22713 GTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 22654
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
|| ||| | ||||| | | ||||| ||||| || || || || ||||| | || ||
Sbjct 22653 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTT 22594
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
||||||||| | ||| ||||| | | ||||| || | |||||| || || || ||
Sbjct 22593 GGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGT 22534
Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009
| || || || |||||||||||||
Sbjct 22533 CAACGTCTTGACGAAGATCTGCATGC 22508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448241389244040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |