Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1375 98.7 9e-16 seq231 96.9 3e-15 seq230 87.8 2e-12 >seq1375 Length=30983 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| ||||| | |||| |||||| ||||| Sbjct 15500 GTGGAGAGTCGACTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCCTCGAGCTG 15559 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| || | ||||| ||||| || ||||| |||||||| | || || Sbjct 15560 CTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTT 15619 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| ||| | | | ||||| | | ||||| || | ||||||||| || || || Sbjct 15620 CGCCTTCACGTTGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTCTTGCCGGT 15679 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||| Sbjct 15680 GAGCGTCTTGACGAAGATCTGCAT 15703 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| || || ||||| || | ||| || || | |||| | ||||| ||||| Sbjct 15728 GTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTG 15787 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 |||||| | ||||| | | ||||| || ||||| || || || || || | || || Sbjct 15788 CTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTT 15847 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAG 94982 |||||||| | ||| |||||| || | ||||| |||| |||||| || || || | Sbjct 15848 CGCCTTGACATTGTCGATAGTGTC-GCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCG 15906 Query 94983 TAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || ||||||||||||| Sbjct 15907 TGAGGGTCTTGACGAAGATCTGCATGC 15933 >seq231 Length=27061 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| ||| || ||||| || | ||| ||||| | ||| | |||||| ||||| Sbjct 903 GTGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTG 844 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 |||||| | ||||| | | ||||| ||||| || || || || ||||| | || || Sbjct 843 CTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTT 784 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 |||||||| | ||| ||||| | | ||||| || | |||||| || || || || Sbjct 783 CGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGT 724 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || ||||||||||||| Sbjct 723 CAATGTCTTGACGAAGATCTGCATGC 698 >seq230 Length=49901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| ||| || ||||| || | ||| || || | ||| | ||||| ||||| Sbjct 22713 GTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 22654 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| | ||||| | | ||||| ||||| || || || || ||||| | || || Sbjct 22653 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTT 22594 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||||||| | ||| ||||| | | ||||| || | |||||| || || || || Sbjct 22593 GGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGT 22534 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || ||||||||||||| Sbjct 22533 CAACGTCTTGACGAAGATCTGCATGC 22508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448241389244040