Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8705 127 3e-25 seq5001 127 3e-25 seq557 87.8 3e-13 >seq8705 Length=3471 Score = 127 bits (140), Expect = 3e-25 Identities = 122/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || ||||||||||| || | Sbjct 349 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 407 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || |||||||||||||| || |||||| |||| || | |||| || |||| Sbjct 408 TCCGCCGCCTCGCTCGTCGTGGTGGTGTGAAGCGTATCTCGGGTCTCATCTACGAGGAGA 467 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | |||| | ||||||||||| ||| ||| Sbjct 468 CCCGCGGTGTTCTCAAGATCTTCCTTGAGAACGT 501 >seq5001 Length=2544 Score = 127 bits (140), Expect = 3e-25 Identities = 122/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || ||||| ||||| || | Sbjct 1816 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAGGGCATCACTAAGCCCGCCA 1874 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || |||||||||||||| || |||||| |||| || | |||| || |||| Sbjct 1875 TCCGCCGCCTCGCTCGTCGTGGTGGTGTGAAGCGTATCTCGGGTCTCATCTACGAGGAGA 1934 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| |||| | ||||||||||| ||| ||| Sbjct 1935 CCCGTGGTGTTCTCAAGATCTTCCTTGAGAACGT 1968 >seq557 Length=26322 Score = 87.8 bits (96), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||| ||||| |||||||| ||||| || |||||| |||| || || |||| || Sbjct 15603 GCTATCCGCCGTCTCGCTCGTCGCGGTGGTGTGAAGCGTATCTCGGGTCTGATCTACGAG 15544 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| ||||| ||| | ||||||||||| ||| ||| Sbjct 15543 GAGACTCGTGGTGTCCTCAAGATCTTCCTTGAGAACGT 15506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067072725077