Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq8705 127 3e-25
seq5001 127 3e-25
seq557 87.8 3e-13
>seq8705
Length=3471
Score = 127 bits (140), Expect = 3e-25
Identities = 122/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || |||||||| || ||||||||||| || |
Sbjct 349 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 407
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || || |||||||||||||| || |||||| |||| || | |||| || ||||
Sbjct 408 TCCGCCGCCTCGCTCGTCGTGGTGGTGTGAAGCGTATCTCGGGTCTCATCTACGAGGAGA 467
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584
|| | |||| | ||||||||||| ||| |||
Sbjct 468 CCCGCGGTGTTCTCAAGATCTTCCTTGAGAACGT 501
>seq5001
Length=2544
Score = 127 bits (140), Expect = 3e-25
Identities = 122/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || |||||||| || ||||| ||||| || |
Sbjct 1816 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAGGGCATCACTAAGCCCGCCA 1874
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || || |||||||||||||| || |||||| |||| || | |||| || ||||
Sbjct 1875 TCCGCCGCCTCGCTCGTCGTGGTGGTGTGAAGCGTATCTCGGGTCTCATCTACGAGGAGA 1934
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584
|||| |||| | ||||||||||| ||| |||
Sbjct 1935 CCCGTGGTGTTCTCAAGATCTTCCTTGAGAACGT 1968
>seq557
Length=26322
Score = 87.8 bits (96), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546
|||||||| ||||| |||||||| ||||| || |||||| |||| || || |||| ||
Sbjct 15603 GCTATCCGCCGTCTCGCTCGTCGCGGTGGTGTGAAGCGTATCTCGGGTCTGATCTACGAG 15544
Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584
|||| ||||| ||| | ||||||||||| ||| |||
Sbjct 15543 GAGACTCGTGGTGTCCTCAAGATCTTCCTTGAGAACGT 15506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79067072725077
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |