Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq245 140 2e-28 seq8651 95.1 8e-15 >seq245 Length=10364 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2718 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2659 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2658 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2624 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 727 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 668 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 667 GCCAATATTTAGCTTTA 651 >seq8651 Length=7692 Score = 95.1 bits (104), Expect = 8e-15 Identities = 178/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||| | || || ||||| ||||| || || || ||||| ||||||| | || |||| Sbjct 5202 CCAAGATTGAAGGAAAGGGCAACGGCATCAAGACTGTCATCCCCAACATGTCCGATGTCG 5261 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 || || ||| ||||| || |||| || || || | ||||| ||||| || || | Sbjct 5262 CTCGCGCTCTCTCGCGCCCGCCCTCCTATCCCACCAAGTTCTTCGGCTGCGAGCTCGGTG 5321 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | |||||| ||| || | || | ||||||| ||| || ||||| | || | | Sbjct 5322 CCCAGACGACGTTCGACGATAAGACTGAGCGCTACATTGTCAACGGCGCCCACGATGCGA 5381 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 || ||| || | || |||||||| || |||||||||||| || | ||| Sbjct 5382 CCCGCATGCGTGAGCTCCTCGACGGCTTCATCGACAAGTTTGTGCTCTGCAAGAGCTGCA 5441 Query 6472 ATAACCCGGAGACCGAGCTTAT 6493 | || |||||||| || || || Sbjct 5442 AGAATCCGGAGACGGATCTCAT 5463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334910913599759