Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq622 98.7 1e-15 >seq622 Length=23078 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 15407 GGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCG 15466 || ||||||||||| || || ||||| |||||||| | |||||||| ||| | || || Sbjct 3262 GGCCCGACGTACTACCAGCGCCTCAAGCACATGGTCGACGACAAGATCCACTCACGTGCG 3321 Query 15467 CACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGC 15526 | || | || || ||| ||||||||| | || || |||| | ||| ||| Sbjct 3322 CGGGGGCCCGTCCAGATCCTCACCCGCCAGCCCGTCGAGGGCCGCTCGCGCGACGGCGGC 3381 Query 15527 CTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTC 15586 |||||||| ||||||||||| |||||||| | |||||||| | || ||| | Sbjct 3382 CTCCGCTTCGGAGAGATGGAGCGCGACTGCATGATCTCGCACGGCGTCGCCGGCTTCTTG 3441 Query 15587 AACGAGCGCATGTT 15600 || |||||| |||| Sbjct 3442 AAAGAGCGCCTGTT 3455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 15043 GCGCACGCCCGAGATTGGCGACAAGTTTTGCTCT-GGTATGGCGCAAAAGGGCACGTGCG 15101 ||||| || |||||||||||||||| || || | ||| || |||||||| || Sbjct 2913 GCGCATCCCGCAGATTGGCGACAAGTTCGCGTCCCGGCACGGC-CAGAAGGGCACCGTCG 2971 Query 15102 GCATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTA 15161 |||| | | || |||||| |||||||| | || || ||||| ||||||||| | Sbjct 2972 GCATCACGTACCGCCAGGAGGACATGCCGTACACGGCCGACGGCATCGTGCCCGACATCA 3031 Query 15162 TCATCAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||||||||| || |||||||| |||||||| || Sbjct 3032 TCATCAACCCGCACGCGATCCCGTCGCGCATGACGAT 3068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611324066706400