Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq231 104 2e-17 seq1375 100 2e-16 seq230 95.1 1e-14 >seq231 Length=27061 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || ||| |||| || || || || || | Sbjct 700 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCG 759 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || ||||||||||| || || || || || Sbjct 760 GACACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 819 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | |||||| ||||||| | || ||||||||| Sbjct 820 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTTTCGGATTACAAC 879 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 880 ATCCAGAAGGAGTCGAC 896 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| || || || || | || Sbjct 134 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 193 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| || || ||||| || Sbjct 194 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 253 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| ||||| ||| | ||||| |||||| | || || ||||| Sbjct 254 CAGCGCCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAT 313 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 314 ATCCAGAAGGAGTCGAC 330 >seq1375 Length=30983 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| ||||| || || | | | Sbjct 15931 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTTGAGGTCGAGTCGAGC 15872 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || || |||||||| || || ||||| || Sbjct 15871 GACACTATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAG 15812 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | ||||| |||||| | || || |||||| Sbjct 15811 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAC 15752 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || |||||| Sbjct 15751 ATTCAGAAGGAGTCCACC 15734 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| | ||||| || || | Sbjct 15703 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGTTGGAAGTCGAGTCCTCG 15644 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || ||||| |||||||| || || || || Sbjct 15643 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAAGAGGGTATCCCGCCAGACCAG 15584 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||| ||| | |||||| ||||| | || ||||||||| Sbjct 15583 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCGGATTACAAC 15524 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 15523 ATTCAGAAGGAGTCGAC 15507 >seq230 Length=49901 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| || || || || | | | Sbjct 21665 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC 21724 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||| || || || || || Sbjct 21725 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 21784 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| ||||| ||| | ||||| ||| ||| | || || |||||| Sbjct 21785 CAGCGCCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAAC 21844 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 21845 ATCCAGAAGGAGTCGAC 21861 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || ||| |||| || || || || || | Sbjct 22510 ATGCAGATCTTCGTCAAGACGTTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 22569 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| || || || || || Sbjct 22570 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 22629 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 22630 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 22689 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 22690 ATCCAGAAGGAGTCGAC 22706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419682528898285