Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8511 100 6e-16 seq522 86.0 1e-11 >seq8511 Length=60514 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || || ||||| |||||||||||||| || || | ||||| || || | Sbjct 8944 GGCTCCCTCTCCGGTGGCTGGAAGATGAAGCTCGCTCTTGCCCGCGCTATCCTCTTCAAG 9003 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || || || ||||| || |||||| ||||| | ||| || |||||| Sbjct 9004 GCCGACATTCTCCTCCTCGACGAGCCGACGAACCACTTGGACGTCGTCAATGTCGCCTGG 9063 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| ||| | || |||| | ||| |||| ||||| |||||||| Sbjct 9064 CTCGAGGGCTACCTCACCGGCCTCAAGACCTGCACATCCATCATCGTCTCGCACGACTCG 9123 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 9124 GGCTTCCT 9131 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/182 (72%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || || || ||| | || |||||||| || |||| |||| | |||||| ||| || || Sbjct 9427 GGCCCGAACGGTTCTGGCAAGTCTACTCTCGTCAAGCTCCTCATTGGCGACACCGAGCCC 9486 Query 280239 A-CTGAGG-GGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | | | || ||| | | |||||||| |||||| | || | ||||| || |||||| Sbjct 9487 AACCGTGGTGGTGAGGTGTGGAAGCACCCCAACCTTGTCATCGGCTACGTGGCACAGCAC 9546 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || ||||||||||| || | ||||| |||| |||||| | | ||||| | ||||| Sbjct 9547 GCCTTCCACCACATTGACCAGCACCTCGACAAGACTCCGCTCGAGTACATGCTCTGGCGT 9606 Query 280356 TA 280357 || Sbjct 9607 TA 9608 >seq522 Length=1154 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 251590 GAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGT 251649 ||||| | |||||||||||||||||||| ||| | ||||| ||||| | || || Sbjct 1154 GAGATCATGTCCATGAAGTCGAAGGGGTTGGTGACGTTGTAGTGCTTCGAGCCACCGAGG 1095 Query 251650 GCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATG 251709 || |||| | |||||| ||||| ||||| | ||||| | ||| || | | ||||||| Sbjct 1094 GCGACGAGTAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATG 1035 Query 251710 CCAATCA 251716 || |||| Sbjct 1034 CCGATCA 1028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027719739345649