Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq522 360 4e-94 seq523 354 2e-92 seq4264 147 4e-30 >seq522 Length=1154 Score = 360 bits (398), Expect = 4e-94 Identities = 474/645 (73%), Gaps = 18/645 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| ||||||||||| |||||| |||||||| Sbjct 313 ATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACCTGTCCAAGGAC 372 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA-----GTTT-TTCCTCAAAAACATA 42422 | || |||| || || | |||| |||| || || ||| || || | Sbjct 373 ATCCACGACTGG-AGCAACCGCCTGA--ACGACAACGAGCGTCACTTCATCTCGCACGTC 429 Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| ||||| |||||||| ||||| ||||||||| | | ||| | Sbjct 430 CTTGCCTTCTTCGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAACGCTTCTCG 489 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||||||| | ||| |||||||||||||||||||||||||| || |||||| Sbjct 490 GGCGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATGGAGAAC 549 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||||||| ||| | || || |||| ||||| ||| || | |||| Sbjct 550 ATCCACTCTGAGACCTACTCGCTCCTCATCGACACATACATTAAGGAGCCGGCGCAGCGC 609 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || ||| | || || ||||| || |||||| | ||| ||||| || |||||| Sbjct 610 GAGTTCCTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGCAAGGCTGAGTGGGCG 669 Query 42663 CTCAACTGGATCGA-GA-GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 |||| |||||| | || | | || || ||||||||||| | || || || || ||| Sbjct 670 CTCACGTGGATCAACGACGAGCAGA-GCT-CGTTCGGCGAGCGCCTCGTTGCGTTCGCCG 727 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAG 42779 |||||||||||||||||||||||||| | |||||||||||||||||||||||| || | Sbjct 728 CCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGCG 787 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | || |||||||| ||||||||||| ||||| |||||| | |||||||| |||| Sbjct 788 GACTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCAC 846 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | |||||||||||||||||| ||| |||||||||| || ||| |||| Sbjct 847 ACGGACTTTGCCTGCCTCCTCTTC---AGCCACCTCAAGCGTCGCCCCAACGAGGACGTT 903 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 || |||||||||||||| |||||||| |||||| |||||||| Sbjct 904 GTGCGGGCCATCATCACCGAGGCCGTTACCATCGAGCAGGAGTTC 948 >seq523 Length=1154 Score = 354 bits (392), Expect = 2e-92 Identities = 473/645 (73%), Gaps = 18/645 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| ||||||||||| |||||| |||||||| Sbjct 313 ATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACCTGTCCAAGGAC 372 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA-----GTTT-TTCCTCAAAAACATA 42422 | || |||| || || | |||| |||| || || ||| || || | Sbjct 373 ATCCACGACTGG-AGCAACCGCCTGA--ACGACAACGAGCGTCACTTCATCTCGCACGTC 429 Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| ||||| |||||||| ||||| ||||||||| | | ||| | Sbjct 430 CTCGCCTTCTTCGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAACGCTTCTCG 489 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||||||| | ||| |||||||||||||||||||||||||| || |||||| Sbjct 490 GGTGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATGGAGAAC 549 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||||||| ||| | || || |||| ||||| ||| || | |||| Sbjct 550 ATCCACTCTGAGACCTACTCGCTCCTCATCGACACATACATTAAGGAGCCGGCGCAGCGC 609 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || ||| | || || ||||| || |||||| | ||| ||||| || |||||| Sbjct 610 GAGTTCCTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGCAAGGCTGAGTGGGCG 669 Query 42663 CTCAACTGGATCGA-GA-GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 |||| |||||| | || | | || || ||||||||||| | || || || || ||| Sbjct 670 CTCACGTGGATCAACGACGAGCAGA-GCT-CGTTCGGCGAGCGCCTCGTTGCGTTCGCCG 727 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAG 42779 |||||||||||||||||||||||||| | ||||| |||||||||||||||||| || | Sbjct 728 CCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCGTCCATCTTCTGGCTCAAGAAGCGCG 787 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | || |||||||| ||||||||||| ||||| |||||| | |||||||| |||| Sbjct 788 GACTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCAC 846 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | |||||||||||||||||| ||| |||||||||| || ||| |||| Sbjct 847 ACGGACTTTGCCTGCCTCCTCTTC---AGCCACCTCAAGCGTCGCCCCAACGAGGACGTT 903 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 || |||||||||||||| |||||||| |||||| |||||||| Sbjct 904 GTGCGGGCCATCATCACCGAGGCCGTTACCATCGAGCAGGAGTTC 948 >seq4264 Length=4713 Score = 147 bits (162), Expect = 4e-30 Identities = 385/584 (66%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 |||||||| || ||||| || || | ||||||||| | || | || ||| ||| Sbjct 2840 AAGAGGTCCGGTATCCACAGCGCATAGAAGAGGTCGCGGGCACGGGATTCTTCCTTGCCG 2899 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 |||||| | || || | |||||||| |||||| ||||||| ||||| | ||||| Sbjct 2900 TGGTTCTTACGGAGGTCAAGGAAGTCAAAAACGTCGGCGTGCCACGGCTCAAGGTAGATG 2959 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAG 245194 |||| ||| ||||| || |||||||| |||||||| || | | ||||| |||| Sbjct 2960 GCGAAGGCACCGGGTCGTTTGTTGCCGCCCTGGTCAACGTAGCGGGCCGTCGCGTCGAAG 3019 Query 245195 ATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC 245254 ||| || | ||||| || ||||| || |||||| || || ||||| | || Sbjct 3020 GCGCGAAGCATGGGCACGATACCGTTCGACATGCCGTTCGTACCGGCAATGTACGACCCG 3079 Query 245255 TTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCG 245314 | | | | |||| |||| | ||| | ||||| || ||| ||||| | || Sbjct 3080 GTCGCACGAATGTTGTGGATGTTGAGGCCGATGCCGCCCGCCGTCTTCGAGATCATCGCA 3139 Query 245315 CAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAG 245374 ||| |||||| || || |||||||| || ||| |||||| || ||| ||| Sbjct 3140 CAGTTCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATACAGACCAGGAAG 3199 Query 245375 CAGGAGGACAGCTGGGGCTTGGGGC---TGCACGAGTTGAACAGAGTGGGGCTGGCGTGG 245431 ||||| | |||||| ||| | ||| | |||||| || || || |||||| Sbjct 3200 CAGGACGCGAGCTGG---TTGTGCACTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGC 3256 Query 245432 GTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCG 245491 || |||| |||| |||| | | | ||||||| | | | || |||| |||||| Sbjct 3257 GTGAAGTGGCGGTTCGACATGTAGTGATACGTCTCAATCGCACGCTCAATGTCCTCGCCG 3316 Query 245492 TGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGT 245551 ||||| | |||| || |||||| ||| || || ||| | || | || Sbjct 3317 TGGATGCCGACGGCGACCCGCATGAGCAGGTGTTGCGGTCGCTCAA--CAACCTTGTTGT 3374 Query 245552 --CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 |||||| | ||| || |||||||| |||||||| || ||| Sbjct 3375 TGATCTTGAGGAGGTATGACCGCTCGAGGGTCTTGAAACCGAAG 3418 Score = 127 bits (140), Expect = 4e-24 Identities = 294/433 (68%), Gaps = 25/433 (6%) Strand=Plus/Plus Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||| | || ||| || ||| || ||| || || ||| |||||||| |||| | Sbjct 1900 GGCTCAAAGCACTCGTTGAAGCCAAGAATCGTCGAGGTCGACGCCGTCGGCATTGGCGCC 1959 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTG-GATGCGGAGTCT-GAGCTCGTTCCAGT 244265 | || || ||||| || ||||||| || | ||| | | || ||| ||| ||||| Sbjct 1960 ATAAGAAGCGAGTTCCGCATGCCGTGC-TCGGCGAT-CTTCGCCTTGAGACCGTCCCAGT 2017 Query 244266 CCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325 |||| || | | |||| | |||| | ||||| ||| ||||||||| || Sbjct 2018 CCCA---GCGCTGG-----CTCG-GCTTGACGTTCCACAGGTCGAACTGCAGCTTGCCAA 2068 Query 244326 TGCTGA-CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAG 244384 |||| | ||||||||||| | ||| ||| ||||| ||| | ||| |||| |||| Sbjct 2069 -GCTGCGCTGGGCTGCCCTCCCACGTCTCGTACGGACCCTCGGTCATGGCGAGCTCACAG 2127 Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444 || | ||| ||||||| || || ||||||||||| |||||| | | || Sbjct 2128 CTAGCCTCGCACGCGGCGTGATACATCGTCTCGAAGATGTCCTTGTTGAGCT-----GCT 2182 Query 244445 TTGCCGCAGGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 | ||| | ||||| |||||| || || | |||||| ||||||| || ||||| Sbjct 2183 TCGCCTCGGGTGACTCGAAGGGGAAGCGCAGCGCCATGAATGCGTCGGCGAGACCCTGGC 2242 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAA 244559 |||||||||||| || | ||| ||| |||| |||||| |||| || || | || || Sbjct 2243 AGCCGATGCCGATCGGGCGGTGGCGCATGTTCGAGCGCTTGGCCTCCGGGATAGGATAGT 2302 Query 244560 AGTTGCCGTCGAT 244572 |||| |||||| Sbjct 2303 AGTTCTTGTCGAT 2315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944234272110640