Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq522 360 4e-94
seq523 354 2e-92
seq4264 147 4e-30
>seq522
Length=1154
Score = 360 bits (398), Expect = 4e-94
Identities = 474/645 (73%), Gaps = 18/645 (3%)
Strand=Plus/Plus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368
|||||||||||||| || ||| |||||| ||||||||||| |||||| ||||||||
Sbjct 313 ATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACCTGTCCAAGGAC 372
Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA-----GTTT-TTCCTCAAAAACATA 42422
| || |||| || || | |||| |||| || || ||| || || |
Sbjct 373 ATCCACGACTGG-AGCAACCGCCTGA--ACGACAACGAGCGTCACTTCATCTCGCACGTC 429
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||||||||| ||||| |||||||| ||||| ||||||||| | | ||| |
Sbjct 430 CTTGCCTTCTTCGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAACGCTTCTCG 489
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
||||||||| | ||| |||||||||||||||||||||||||| || ||||||
Sbjct 490 GGCGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATGGAGAAC 549
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||||||| ||| | || || |||| ||||| ||| || | ||||
Sbjct 550 ATCCACTCTGAGACCTACTCGCTCCTCATCGACACATACATTAAGGAGCCGGCGCAGCGC 609
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
| || ||| | || || ||||| || |||||| | ||| ||||| || ||||||
Sbjct 610 GAGTTCCTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGCAAGGCTGAGTGGGCG 669
Query 42663 CTCAACTGGATCGA-GA-GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720
|||| |||||| | || | | || || ||||||||||| | || || || || |||
Sbjct 670 CTCACGTGGATCAACGACGAGCAGA-GCT-CGTTCGGCGAGCGCCTCGTTGCGTTCGCCG 727
Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAG 42779
|||||||||||||||||||||||||| | |||||||||||||||||||||||| || |
Sbjct 728 CCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGCG 787
Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839
| || |||||||| ||||||||||| ||||| |||||| | |||||||| ||||
Sbjct 788 GACTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCAC 846
Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899
| |||||||||||||||||| ||| |||||||||| || ||| ||||
Sbjct 847 ACGGACTTTGCCTGCCTCCTCTTC---AGCCACCTCAAGCGTCGCCCCAACGAGGACGTT 903
Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944
|| |||||||||||||| |||||||| |||||| ||||||||
Sbjct 904 GTGCGGGCCATCATCACCGAGGCCGTTACCATCGAGCAGGAGTTC 948
>seq523
Length=1154
Score = 354 bits (392), Expect = 2e-92
Identities = 473/645 (73%), Gaps = 18/645 (3%)
Strand=Plus/Plus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368
|||||||||||||| || ||| |||||| ||||||||||| |||||| ||||||||
Sbjct 313 ATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACCTGTCCAAGGAC 372
Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA-----GTTT-TTCCTCAAAAACATA 42422
| || |||| || || | |||| |||| || || ||| || || |
Sbjct 373 ATCCACGACTGG-AGCAACCGCCTGA--ACGACAACGAGCGTCACTTCATCTCGCACGTC 429
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||||||||| ||||| |||||||| ||||| ||||||||| | | ||| |
Sbjct 430 CTCGCCTTCTTCGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAACGCTTCTCG 489
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
||||||||| | ||| |||||||||||||||||||||||||| || ||||||
Sbjct 490 GGTGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATGGAGAAC 549
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||||||| ||| | || || |||| ||||| ||| || | ||||
Sbjct 550 ATCCACTCTGAGACCTACTCGCTCCTCATCGACACATACATTAAGGAGCCGGCGCAGCGC 609
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
| || ||| | || || ||||| || |||||| | ||| ||||| || ||||||
Sbjct 610 GAGTTCCTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGCAAGGCTGAGTGGGCG 669
Query 42663 CTCAACTGGATCGA-GA-GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720
|||| |||||| | || | | || || ||||||||||| | || || || || |||
Sbjct 670 CTCACGTGGATCAACGACGAGCAGA-GCT-CGTTCGGCGAGCGCCTCGTTGCGTTCGCCG 727
Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAG 42779
|||||||||||||||||||||||||| | ||||| |||||||||||||||||| || |
Sbjct 728 CCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCGTCCATCTTCTGGCTCAAGAAGCGCG 787
Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839
| || |||||||| ||||||||||| ||||| |||||| | |||||||| ||||
Sbjct 788 GACTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCAC 846
Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899
| |||||||||||||||||| ||| |||||||||| || ||| ||||
Sbjct 847 ACGGACTTTGCCTGCCTCCTCTTC---AGCCACCTCAAGCGTCGCCCCAACGAGGACGTT 903
Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944
|| |||||||||||||| |||||||| |||||| ||||||||
Sbjct 904 GTGCGGGCCATCATCACCGAGGCCGTTACCATCGAGCAGGAGTTC 948
>seq4264
Length=4713
Score = 147 bits (162), Expect = 4e-30
Identities = 385/584 (66%), Gaps = 10/584 (2%)
Strand=Plus/Plus
Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074
|||||||| || ||||| || || | ||||||||| | || | || ||| |||
Sbjct 2840 AAGAGGTCCGGTATCCACAGCGCATAGAAGAGGTCGCGGGCACGGGATTCTTCCTTGCCG 2899
Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134
|||||| | || || | |||||||| |||||| ||||||| ||||| | |||||
Sbjct 2900 TGGTTCTTACGGAGGTCAAGGAAGTCAAAAACGTCGGCGTGCCACGGCTCAAGGTAGATG 2959
Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAG 245194
|||| ||| ||||| || |||||||| |||||||| || | | ||||| ||||
Sbjct 2960 GCGAAGGCACCGGGTCGTTTGTTGCCGCCCTGGTCAACGTAGCGGGCCGTCGCGTCGAAG 3019
Query 245195 ATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC 245254
||| || | ||||| || ||||| || |||||| || || ||||| | ||
Sbjct 3020 GCGCGAAGCATGGGCACGATACCGTTCGACATGCCGTTCGTACCGGCAATGTACGACCCG 3079
Query 245255 TTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCG 245314
| | | | |||| |||| | ||| | ||||| || ||| ||||| | ||
Sbjct 3080 GTCGCACGAATGTTGTGGATGTTGAGGCCGATGCCGCCCGCCGTCTTCGAGATCATCGCA 3139
Query 245315 CAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAG 245374
||| |||||| || || |||||||| || ||| |||||| || ||| |||
Sbjct 3140 CAGTTCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATACAGACCAGGAAG 3199
Query 245375 CAGGAGGACAGCTGGGGCTTGGGGC---TGCACGAGTTGAACAGAGTGGGGCTGGCGTGG 245431
||||| | |||||| ||| | ||| | |||||| || || || ||||||
Sbjct 3200 CAGGACGCGAGCTGG---TTGTGCACTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGC 3256
Query 245432 GTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCG 245491
|| |||| |||| |||| | | | ||||||| | | | || |||| ||||||
Sbjct 3257 GTGAAGTGGCGGTTCGACATGTAGTGATACGTCTCAATCGCACGCTCAATGTCCTCGCCG 3316
Query 245492 TGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGT 245551
||||| | |||| || |||||| ||| || || ||| | || | ||
Sbjct 3317 TGGATGCCGACGGCGACCCGCATGAGCAGGTGTTGCGGTCGCTCAA--CAACCTTGTTGT 3374
Query 245552 --CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593
|||||| | ||| || |||||||| |||||||| || |||
Sbjct 3375 TGATCTTGAGGAGGTATGACCGCTCGAGGGTCTTGAAACCGAAG 3418
Score = 127 bits (140), Expect = 4e-24
Identities = 294/433 (68%), Gaps = 25/433 (6%)
Strand=Plus/Plus
Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207
||||| | || ||| || ||| || ||| || || ||| |||||||| |||| |
Sbjct 1900 GGCTCAAAGCACTCGTTGAAGCCAAGAATCGTCGAGGTCGACGCCGTCGGCATTGGCGCC 1959
Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTG-GATGCGGAGTCT-GAGCTCGTTCCAGT 244265
| || || ||||| || ||||||| || | ||| | | || ||| ||| |||||
Sbjct 1960 ATAAGAAGCGAGTTCCGCATGCCGTGC-TCGGCGAT-CTTCGCCTTGAGACCGTCCCAGT 2017
Query 244266 CCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325
|||| || | | |||| | |||| | ||||| ||| ||||||||| ||
Sbjct 2018 CCCA---GCGCTGG-----CTCG-GCTTGACGTTCCACAGGTCGAACTGCAGCTTGCCAA 2068
Query 244326 TGCTGA-CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAG 244384
|||| | ||||||||||| | ||| ||| ||||| ||| | ||| |||| ||||
Sbjct 2069 -GCTGCGCTGGGCTGCCCTCCCACGTCTCGTACGGACCCTCGGTCATGGCGAGCTCACAG 2127
Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444
|| | ||| ||||||| || || ||||||||||| |||||| | | ||
Sbjct 2128 CTAGCCTCGCACGCGGCGTGATACATCGTCTCGAAGATGTCCTTGTTGAGCT-----GCT 2182
Query 244445 TTGCCGCAGGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499
| ||| | ||||| |||||| || || | |||||| ||||||| || |||||
Sbjct 2183 TCGCCTCGGGTGACTCGAAGGGGAAGCGCAGCGCCATGAATGCGTCGGCGAGACCCTGGC 2242
Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAA 244559
|||||||||||| || | ||| ||| |||| |||||| |||| || || | || ||
Sbjct 2243 AGCCGATGCCGATCGGGCGGTGGCGCATGTTCGAGCGCTTGGCCTCCGGGATAGGATAGT 2302
Query 244560 AGTTGCCGTCGAT 244572
|||| ||||||
Sbjct 2303 AGTTCTTGTCGAT 2315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944234272110640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |