Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq973 93.3 4e-14 >seq973 Length=1292 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470 || |||||||||||| ||| || || || | ||| ||| || | || || | | Sbjct 357 GCGGGGTTCCACGCAGACAAGATAATCCTCCGATCCGTCGGGTTGTGCTTGAT---CTTC 413 Query 20471 ACAATG---TACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACG 20527 | ||| | | || |||||| | || | ||| |||||||| || ||||| || ||| Sbjct 414 TCGATGCACTCCTTCAGTTGGTCCACGCCTTTGCCCGTATAGTCTGCGTCCGCATCGACG 473 Query 20528 TACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTT 20587 ||| | ||||| ||||| | ||||||||| || || || || || | ||| || |||| | Sbjct 474 TACTCAGCCCCGAAGTGTCGCCACTGGAAGCCATAGACCGGCCCGAGATCGCCTTCCCGT 533 Query 20588 CTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATAT 20643 | |||| ||||||||| | | || || | | |||||||| |||||| || Sbjct 534 CGATGCGAGAGGCCGCGCGAGTCGAGAAAGGCGCGCGAGCCATTGCCGTCCCAGAT 589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441323757964760