Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1375 152 1e-31 seq231 120 7e-22 seq230 116 9e-21 seq473 95.1 3e-14 seq8508 87.8 4e-12 >seq1375 Length=30983 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || ||||| || | ||| || || || || || ||||| | Sbjct 15705 CCGCCGCGGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 15764 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| |||||||| |||||||| || ||| Sbjct 15765 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 15824 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| ||||| || || || || |||| |||||||| || || Sbjct 15825 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACATTGTCGATAGTGTCGCTCGACTCGACC 15884 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| || || || ||||||||||| |||||||| Sbjct 15885 TCAAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 15931 Score = 123 bits (136), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || ||||| || | || || || || || || || || Sbjct 15474 TGGCCACCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCC 15533 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| || || || | || || || |||||||||| |||||| || ||| Sbjct 15534 GAAAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGG---TCT 15590 Query 288364 GG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || ||| || ||||| |||||||| ||||| |||||||| || || | || || Sbjct 15591 GGCGGGATACCCTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGAC 15650 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | |||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 15651 TCGACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 15703 >seq231 Length=27061 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || |||||||| || | ||| || || || | || || || ||||| || || || Sbjct 929 TGGCCACCGCGCAGACGAAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCC 870 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| || || || | || ||||| |||||||| |||||||| || ||| Sbjct 869 GAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGG---TCT 813 Query 288364 GG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || ||| || || || |||||||| ||||| || || || || || | || || Sbjct 812 GGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCCGAGGAC 753 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || |||| ||||||||||| |||||||| Sbjct 752 TCGACCTCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 700 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || || ||||| || ||||| |||||||| || || | |||||||| || || ||| Sbjct 521 CCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTGTCGCTCGACTCGACCTCG 462 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||| || ||||| ||||||||||| || ||||| Sbjct 461 AGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 418 >seq230 Length=49901 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 22700 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 22641 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || ||||| || ||||| ||| || || || |||||||| || || || ||| Sbjct 22640 ATGAGGCGCTGCTGG---TCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 22584 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| || |||| |||||| Sbjct 22583 TTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTG 22524 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 22523 ACGAAGATCTGCAT 22510 >seq473 Length=15333 Score = 95.1 bits (104), Expect = 3e-14 Identities = 178/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 326170 GATTTCTTCGTTCTTCGTGATGCTTGCCACGGATG-CATCGCGGACGTTCAATAGTTTTC 326228 ||| |||||||||||| |||| || | || | || | ||||| ||||| | || || | Sbjct 3124 GATCTCTTCGTTCTTCATGAT-CTGGTCATGCTTGGCCTCGCGAACGTTGAGGAGCTTGC 3182 Query 326229 CACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAA 326288 |||| || |||||||| || | | ||||||||||| ||| || || || || |||| Sbjct 3183 CACGCAGTGGGAACACGCCGAAGTTGTCGCGACCGACGACGCCGAGTCCGGCAATCGCAA 3242 Query 326289 GTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATTTTGCTGTTATTCGTTC 326348 | ||| || ||||| ||||| || || ||||| ||||| ||| ||| || | | Sbjct 3243 GCGTCTTGGCCGAATCACCCTCGGTTAGGATGAGCGTGCAGTCTTTCGCGTTCTTGCTCC 3302 Query 326349 CAGCCCATGTAGCATCGTTGAGTTTGGGAATTCCAGTCACTCGGATCTTCTTGGTACCGT 326408 | || | || || |||||||||| || ||| ||| | || || |||| Sbjct 3303 CTGCGTTGTTCGCGTCCGACAGTTTGGGAAGACCGCTCAGACGGGTGCGTTTCGTGCCGT 3362 Query 326409 CGGTCTTCTTCAGCTCTTT 326427 | |||||||| | ||| || Sbjct 3363 CCGTCTTCTTGATCTCCTT 3381 >seq8508 Length=84800 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 65523 TCGAGGGCGCGCTGAAGCTCAAAGAGATTTCGTATATTCATGCGGAAGGTTTTCATGGTG 65582 ||||||||||||| ||| |||| ||||| ||||| || || | || ||| | | || || Sbjct 54291 TCGAGGGCGCGCTCAAGATCAAGGAGATCTCGTACATGCACTCCGAGGGTATCCTTGCTG 54350 Query 65583 GTGAGCTGAAGCATGGGCCTCTCGCTCTTATCGATGAGAAAACACCGGTCATC 65635 | ||||| ||||| || || ||||| || ||||| ||||| | ||||| ||| Sbjct 54351 GAGAGCTCAAGCACGGCCCGCTCGCCCTCATCGACGAGAACATGCCGGTGATC 54403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179520048791742