Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1375 152 1e-31
seq231 120 7e-22
seq230 116 9e-21
seq473 95.1 3e-14
seq8508 87.8 4e-12
>seq1375
Length=30983
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| |||||||| | || ||||| || | ||| || || || || || ||||| |
Sbjct 15705 CCGCCGCGGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 15764
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || ||||| |||||||| |||||||| || |||
Sbjct 15765 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 15824
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| ||||| || || || || |||| |||||||| || ||
Sbjct 15825 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACATTGTCGATAGTGTCGCTCGACTCGACC 15884
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| |||||||||||||| || || || ||||||||||| ||||||||
Sbjct 15885 TCAAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 15931
Score = 123 bits (136), Expect = 6e-23
Identities = 168/233 (72%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| ||||| | || ||||| || | || || || || || || || ||
Sbjct 15474 TGGCCACCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCC 15533
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| || || || | || || || |||||||||| |||||| || |||
Sbjct 15534 GAAAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGG---TCT 15590
Query 288364 GG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
|| ||| || ||||| |||||||| ||||| |||||||| || || | || ||
Sbjct 15591 GGCGGGATACCCTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGAC 15650
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| | |||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 15651 TCGACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 15703
>seq231
Length=27061
Score = 120 bits (132), Expect = 7e-22
Identities = 167/233 (72%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| |||||||| || | ||| || || || | || || || ||||| || || ||
Sbjct 929 TGGCCACCGCGCAGACGAAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCC 870
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| || || || | || ||||| |||||||| |||||||| || |||
Sbjct 869 GAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGG---TCT 813
Query 288364 GG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
|| ||| || || || |||||||| ||||| || || || || || | || ||
Sbjct 812 GGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCCGAGGAC 753
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || |||||||||||||| || |||| ||||||||||| ||||||||
Sbjct 752 TCGACCTCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 700
Score = 102 bits (112), Expect = 2e-16
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
|| || || ||||| || ||||| |||||||| || || | |||||||| || || |||
Sbjct 521 CCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTGTCGCTCGACTCGACCTCG 462
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||||||||| || ||||| ||||||||||| || |||||
Sbjct 461 AGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 418
>seq230
Length=49901
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | || ||||| ||||| || | || || || ||||||
Sbjct 22700 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 22641
Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| || ||||| || ||||| ||| || || || |||||||| || || || |||
Sbjct 22640 ATGAGGCGCTGCTGG---TCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 22584
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | || || || || ||||||||||||||||| || |||| ||||||
Sbjct 22583 TTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTG 22524
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 22523 ACGAAGATCTGCAT 22510
>seq473
Length=15333
Score = 95.1 bits (104), Expect = 3e-14
Identities = 178/259 (69%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 326170 GATTTCTTCGTTCTTCGTGATGCTTGCCACGGATG-CATCGCGGACGTTCAATAGTTTTC 326228
||| |||||||||||| |||| || | || | || | ||||| ||||| | || || |
Sbjct 3124 GATCTCTTCGTTCTTCATGAT-CTGGTCATGCTTGGCCTCGCGAACGTTGAGGAGCTTGC 3182
Query 326229 CACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAA 326288
|||| || |||||||| || | | ||||||||||| ||| || || || || ||||
Sbjct 3183 CACGCAGTGGGAACACGCCGAAGTTGTCGCGACCGACGACGCCGAGTCCGGCAATCGCAA 3242
Query 326289 GTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATTTTGCTGTTATTCGTTC 326348
| ||| || ||||| ||||| || || ||||| ||||| ||| ||| || | |
Sbjct 3243 GCGTCTTGGCCGAATCACCCTCGGTTAGGATGAGCGTGCAGTCTTTCGCGTTCTTGCTCC 3302
Query 326349 CAGCCCATGTAGCATCGTTGAGTTTGGGAATTCCAGTCACTCGGATCTTCTTGGTACCGT 326408
| || | || || |||||||||| || ||| ||| | || || ||||
Sbjct 3303 CTGCGTTGTTCGCGTCCGACAGTTTGGGAAGACCGCTCAGACGGGTGCGTTTCGTGCCGT 3362
Query 326409 CGGTCTTCTTCAGCTCTTT 326427
| |||||||| | ||| ||
Sbjct 3363 CCGTCTTCTTGATCTCCTT 3381
>seq8508
Length=84800
Score = 87.8 bits (96), Expect = 4e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 65523 TCGAGGGCGCGCTGAAGCTCAAAGAGATTTCGTATATTCATGCGGAAGGTTTTCATGGTG 65582
||||||||||||| ||| |||| ||||| ||||| || || | || ||| | | || ||
Sbjct 54291 TCGAGGGCGCGCTCAAGATCAAGGAGATCTCGTACATGCACTCCGAGGGTATCCTTGCTG 54350
Query 65583 GTGAGCTGAAGCATGGGCCTCTCGCTCTTATCGATGAGAAAACACCGGTCATC 65635
| ||||| ||||| || || ||||| || ||||| ||||| | ||||| |||
Sbjct 54351 GAGAGCTCAAGCACGGCCCGCTCGCCCTCATCGACGAGAACATGCCGGTGATC 54403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179520048791742
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |