Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1375 132 5e-26 seq231 129 6e-25 seq230 129 6e-25 >seq1375 Length=30983 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| ||||| ||||| || | ||||| || |||| || |||||| Sbjct 15729 TGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGC 15788 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || ||||| ||||| ||||||||||||| || | || |||||| ||| ||| || Sbjct 15789 TTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTC 15848 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 |||| | | | ||||||||||| || || || | |||||| || |||||||| Sbjct 15849 GCCTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCGTG 15908 Query 42186 AGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||| ||||| Sbjct 15909 AGGGTCTTGACGAAGATCTGCAT 15931 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| | ||||| || | || || |||||||| || ||||| Sbjct 15512 CTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAA 15571 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||| | || | | ||| |||||| ||| || || | ||| Sbjct 15572 GATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTTCGCCTTCA-CGT 15630 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || || | ||||||||| ||||| || |||||||| | Sbjct 15631 TGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGA 15690 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 15691 CGAAGATCTGCAT 15703 >seq231 Length=27061 Score = 129 bits (142), Expect = 6e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || | ||||| || |||| || |||||||| || || || Sbjct 325 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAA 266 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 265 GATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 207 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || || |||| |||||||| ||||| || |||||||| | Sbjct 206 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCA 147 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 146 CGAAGATTTGCAT 134 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| | || || || | || || |||||||| || ||||| Sbjct 891 CTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 832 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 831 GATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 772 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || || | |||||| || |||||||| | ||||| || Sbjct 771 GTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGAC 712 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 711 GAAGATCTGCAT 700 >seq230 Length=49901 Score = 129 bits (142), Expect = 6e-25 Identities = 148/194 (76%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| || || || Sbjct 21856 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCAAA 21797 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 || || ||||||||||| | || | || |||||||||| ||| | || | |||| || Sbjct 21796 GATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 21739 Query 42136 TCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | |||||||||||| || || |||| |||||||| ||||| || |||||||| Sbjct 21738 TTGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTC 21679 Query 42195 ACAAAGATTTGCAT 42208 || ||||||||||| Sbjct 21678 ACGAAGATTTGCAT 21665 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 22701 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 22642 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 22641 GATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 22583 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||| || |||||||| | |||||| | Sbjct 22582 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGA 22523 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 22522 CGAAGATCTGCAT 22510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543152442267760